Co-expression analysis

Gene ID EBem09_SQ004_I01_at
Gene name
Homology with ArabidopsisSimilar to At3g32100: unknown protein (HF=6e-1)
Module size 9 genes
NF 0.14
%ile 17.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.86EBem09_SQ004_I01_atEBem09_SQ004_I01--6e-1At3g32100unknown proteinO.I.H.G.S.X.
0.3647.10.97Contig26035_atContig26035--2e+0At1g10600-O.I.H.G.S.X.
0.3342.60.97rbags18m16_atrbags18m16--2e+0At2g35790unknown proteinO.I.H.G.S.X.
0.3342.60.97HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.
0.3037.00.97Contig17900_atContig17900--6e+0At4g05170DNA binding / transcription factorO.I.H.G.S.X.
0.2732.10.93HX02B15u_atHX02B15u--5e-1At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.2732.10.94Contig415_s_atContig415--3e-43At3g44110ATJ3O.I.H.G.S.X.
0.2528.90.95Contig23019_atContig23019--2e+0At1g73780protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.032.60.89Contig3968_atContig3968--3e-45At5g47040LON2 (LON PROTEASE 2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.196.2GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.194.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage