Co-expression analysis

Gene ID	EBem09_SQ002_L08_s_at
Gene name
Homology with Arabidopsis	Similar to At2g27790: nucleic acid binding / nucleotide binding (HF=1e-1)
Module size	6 genes
NF	0.12
%ile	14.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.93	EBem09_SQ002_L08_s_at	EBem09_SQ002_L08	-	-	1e-1	At2g27790	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig25721_at	Contig25721	-	-	2e+0	At1g67360	rubber elongation factor (REF) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig7857_s_at	Contig7857	-	-	1e-3	At3g06850	BCE2	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.93	Contig14509_at	Contig14509	-	-	6e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.92	Contig2540_at	Contig2540	-	-	2e-27	At3g11500	small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.92	Contig12713_at	Contig12713	-	-	7e-3	At4g01900	GLB1 (GLNB1 HOMOLOG)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.2	90.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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