Co-expression analysis

Gene ID	EBem09_SQ001_L06_s_at
Gene name
Homology with Arabidopsis	Similar to At5g16470: zinc finger (C2H2 type) family protein (HF=5e-1)
Module size	9 genes
NF	0.57
%ile	79.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	75.8	0.95	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig25107_at	Contig25107	-	-	2e+0	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	HW08B21u_s_at	HW08B21u	-	-	1e+1	At5g23903	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig9703_at	Contig9703	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.9	98.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.9	98.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.7	98.3	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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