Co-expression analysis

Gene ID EBem09_SQ001_B21_s_at
Gene name
Homology with ArabidopsisSimilar to At5g36920: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.64
%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98EBem09_SQ001_B21_s_atEBem09_SQ001_B21--2e+0At5g36920unknown proteinO.I.H.G.S.X.
0.7187.10.98rbags18e07_s_atrbags18e07--4e-1At3g58170BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)O.I.H.G.S.X.
0.6784.70.98Contig18703_atContig18703--1e+0At5g48205zinc ion bindingO.I.H.G.S.X.
0.6178.70.98Contig7221_s_atContig7221--6e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4762.20.98Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.4458.90.98HA12A08u_s_atHA12A08u--5e-2At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.96HS09O14r_s_atHS09O14r--8e+0At5g24352-O.I.H.G.S.X.
0.6784.70.96Contig22268_atContig22268--2e+0At1g2740060S ribosomal protein L17 (RPL17A)O.I.H.G.S.X.
0.6784.70.96Contig5119_atContig5119--4e-15At1g26830ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3)O.I.H.G.S.X.
0.6784.70.97Contig16694_atContig16694--2e-3At1g58420-O.I.H.G.S.X.
0.6380.30.97Contig2975_s_atContig2975--2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.6380.30.98Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.6178.70.95HB22P12r_x_atHB22P12r--4e-30At1g07930elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.5674.30.98Contig2584_atContig2584--1e-6At3g5389040S ribosomal protein S21 (RPS21B)O.I.H.G.S.X.
0.5572.00.92Contig3291_s_atContig3291--5e-4At3g13230RNA bindingO.I.H.G.S.X.
0.5572.00.98Contig18403_atContig18403--3e-1At1g73490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5369.70.97Contig6217_atContig6217--5e-86At5g19820emb2734 (embryo defective 2734)O.I.H.G.S.X.
0.5369.70.97Contig3972_atContig3972--7e-7At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.5066.90.95Contig8182_atContig8182--1e+0At2g30560glycine-rich proteinO.I.H.G.S.X.
0.5066.90.96Contig6702_atContig6702--1e-1At1g44085glycine-rich proteinO.I.H.G.S.X.
0.5066.90.98HS18F06u_s_atHS18F06u--7e-14At2g4761060S ribosomal protein L7A (RPL7aA)O.I.H.G.S.X.
0.5066.90.98Contig16972_atContig16972--5e-10At5g64813LIP1 (Light Insensitive Period1)O.I.H.G.S.X.
0.5066.90.98Contig11081_atContig11081--1e-26At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.4863.20.96Contig3193_s_atContig3193--7e-15At4g32470ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.4762.20.96EBed02_SQ003_L11_s_atEBed02_SQ003_L11--1e-11At3g6077040S ribosomal protein S13 (RPS13A)O.I.H.G.S.X.
0.4762.20.98Contig25214_atContig25214--1e+0At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.4661.00.98Contig1913_s_atContig1913--2e-46At3g0920060S acidic ribosomal protein P0 (RPP0B)O.I.H.G.S.X.
0.4458.90.98Contig21003_atContig21003--6e+0At5g17280unknown proteinO.I.H.G.S.X.
0.4255.20.97Contig4411_atContig4411--3e-56At4g18710BIN2 (BRASSINOSTEROID-INSENSITIVE 2)O.I.H.G.S.X.
0.4053.10.96Contig7055_atContig7055--1e-5At1g69530ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)O.I.H.G.S.X.
0.4053.10.97Contig15613_atContig15613--7e-16At3g48860unknown proteinO.I.H.G.S.X.
0.4053.10.97EBpi03_SQ003_A03_s_atEBpi03_SQ003_A03--6e-4At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.4053.10.97Contig6681_atContig6681--4e+0At5g63460SAP domain-containing proteinO.I.H.G.S.X.
0.4053.10.98EBma03_SQ002_K01_s_atEBma03_SQ002_K01--5e+0At5g63905unknown proteinO.I.H.G.S.X.
0.3849.50.95Contig3409_atContig3409--5e-7At5g65260polyadenylate-binding protein family protein / PABP family proteinO.I.H.G.S.X.
0.3849.50.96Contig21366_atContig21366--2e+0At4g08170inositol 1,3,4-trisphosphate 5/6-kinase family proteinO.I.H.G.S.X.
0.3849.50.98Contig10380_x_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.3849.50.98HY09M22u_s_atHY09M22u--3e+0At2g04378beta-galactosidaseO.I.H.G.S.X.
0.3849.50.94Contig9012_s_atContig9012--3e-20At1g80230cytochrome c oxidase family proteinO.I.H.G.S.X.
0.3849.50.94Contig4259_s_atContig4259--2e-9At3g56490zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.3849.50.95HVSMEc0001D14f_x_atHVSMEc0001D14f--2e+0At1g13670unknown proteinO.I.H.G.S.X.
0.3747.90.98Contig10241_atContig10241--2e-9At1g29120unknown proteinO.I.H.G.S.X.
0.3647.10.96HY09G23u_s_atHY09G23u--8e-1At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.3647.10.96Contig14891_atContig14891--5e-9At3g61870unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig2047_s_atContig2047--5e-1At3g26932DRB3 (dsRNA-binding protein 3)O.I.H.G.S.X.
0.3342.60.97Contig5066_atContig5066--7e-1At3g42310unknown proteinO.I.H.G.S.X.
0.3342.60.98Contig19629_atContig19629--1e-26At1g80900magnesium transporter CorA-like family protein (MGT1) (MRS2)O.I.H.G.S.X.
0.3240.30.97Contig3541_s_atContig3541--2e-5At2g36390SBE2.1 (starch branching enzyme 2.1)O.I.H.G.S.X.
0.3240.30.98Contig14763_atContig14763--2e-1At2g37510RNA-binding protein, putativeO.I.H.G.S.X.
0.3240.30.97Contig3675_atContig3675--2e-10At3g55500ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)O.I.H.G.S.X.
0.3138.60.98Contig22688_atContig22688--2e+0At2g01860EMB975 (EMBRYO DEFECTIVE 975)O.I.H.G.S.X.
0.2935.50.96HVSMEb0001J09r2_s_atHVSMEb0001J09r2--7e+0At5g45710RHA1 (ROOT HANDEDNESS 1)O.I.H.G.S.X.
0.2935.50.94Contig7215_atContig7215--2e-1At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.2935.50.96Contig4350_s_atContig4350--2e-85At2g42790CSY3 (citrate synthase 3)O.I.H.G.S.X.
0.2935.50.97HI05M04r_s_atHI05M04r--1e-23At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.2935.50.98Contig20936_atContig20936--3e-5At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.899.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
13.799.5GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
10.899.2GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.596.7GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM261068Albina f-17 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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