Co-expression analysis

Gene ID	EBem09_SQ001_B21_s_at
Gene name
Homology with Arabidopsis	Similar to At5g36920: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.64
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.98	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.98	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.8	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7	99.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
10.8	99.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.712.1.A1_at, orthologous to the query gene, EBem09_SQ001_B21_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.66	82.3	ZmAffx.712.1.A1_at	At5g36920	-	-	3e+0	At4g38092	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.1960.1.A1_at	At5g36920	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.1104.1.A1_at	At5g36920	Zea mays MADS8	-	4e-2	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.45	56.4	ZmAffx.834.1.A1_at	At5g36920	-	-	8e-1	At1g54420	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.9645.1.S1_at	At5g36920	ZmMybst1	-	1e-8	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.39	45.6	ZmAffx.757.1.A1_at	At5g36920	-	-	3e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.15437.1.S1_at	At5g36920	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.14701.1.A1_at	At5g36920	-	-	1e-25	At3g03940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.18431.1.S1_at	At5g36920	-	-	4e-28	At3g21690	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.4602.1.A1_at	At5g36920	-	-	1e-1	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.4545.1.A1_at	At5g36920	VAMP-like protein YKT62	-	9e-18	At5g58060	YKT61	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.16824.1.S1_a_at	At5g36920	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.1342.1.S1_at	At5g36920	-	-	4e-5	At1g23230	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.15414.1.A1_at	At5g36920	-	-	5e+0	At4g01170	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.9328.1.A1_s_at	At5g36920	12-oxo-phytodienoic acid reductase	-	1e+0	At1g76690	OPR2	O.I.	H.G.	S.X.	Please select
0.15	8.6	Zm.13855.1.A1_at	At5g36920	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.14	7.7	Zm.18406.1.A1_at	At5g36920	-	-	1e-7	At2g37860	LCD1 (LOWER CELL DENSITY 1)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.3612.1.A1_at	At5g36920	hypothetical protein LOC100216585	-	2e-12	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.18465.1.A1_at	At5g36920	-	-	1e+1	At4g09100	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	Zm.13713.1.A1_at	At5g36920	hypothetical protein LOC100193720	-	2e-24	At4g39200	40S ribosomal protein S25 (RPS25E)	O.I.	H.G.	S.X.	Please select
0.12	5.9	ZmAffx.1008.1.A1_at	At5g36920	-	-	3e+0	At5g19030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	Zm.1972.1.A1_at	At5g36920	-	-	2e+1	Atcg00790	-	O.I.	H.G.	S.X.	Please select
0.07	2.9	Zm.2150.1.A1_a_at	At5g36920	Hypothetical protein LOC100193916	-	4e-33	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage