CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBem09_SQ001_B21_s_at

Gene name
Homology with Arabidopsis Similar to At5g36920: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.64

%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 EBem09_SQ001_B21_s_at EBem09_SQ001_B21 - - 2e+0 At5g36920 unknown protein O.I. H.G. S.X.
0.71 87.1 0.98 rbags18e07_s_at rbags18e07 - - 4e-1 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) O.I. H.G. S.X.
0.67 84.7 0.98 Contig18703_at Contig18703 - - 1e+0 At5g48205 zinc ion binding O.I. H.G. S.X.
0.61 78.7 0.98 Contig7221_s_at Contig7221 - - 6e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.2 0.98 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) O.I. H.G. S.X.
0.44 58.9 0.98 HA12A08u_s_at HA12A08u - - 5e-2 At1g22780 PFL (POINTED FIRST LEAVES) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.
0.61	78.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.47	62.2	0.98	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.
0.44	58.9	0.98	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.8 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7 99.5 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
10.8 99.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5 96.7 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1 94.1 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM161148 7% SWC rep3 GSE6990 Barley drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
22.8	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7	99.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
10.8	99.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the grape gene, 1617958_at, orthologous to the query gene, EBem09_SQ001_B21_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 1617958_at At5g36920 - - 2e-1 At5g57655 xylose isomerase family protein O.I. H.G. S.X.
0.55 77.3 1608540_at At5g36920 - - 1e-32 At3g53430 60S ribosomal protein L12 (RPL12B) O.I. H.G. S.X.
0.52 73.9 1608554_at At5g36920 - - 4e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) O.I. H.G. S.X.
0.50 72.7 1620803_at At5g36920 - - 2e-5 At4g09070 - O.I. H.G. S.X.
0.48 68.8 1615608_at At5g36920 hypothetical protein LOC100248960 /// hypothetical protein LOC100255476 - 1e-22 At4g13050 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative O.I. H.G. S.X.
0.48 68.8 1608276_at At5g36920 - - 2e+0 At2g03710 SEP4 (SEPALLATA 4) O.I. H.G. S.X.
0.48 68.8 1619679_at At5g36920 - - 1e+0 At3g15690 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related O.I. H.G. S.X.
0.44 64.1 1615252_at At5g36920 hypothetical protein LOC100265321 - 6e-12 At4g10030 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.43 61.5 1608061_at At5g36920 - - 6e+0 At1g12650 unknown protein O.I. H.G. S.X.
0.42 60.1 1621419_at At5g36920 similar to Os09g0515500 - 4e+0 At3g53370 DNA-binding S1FA family protein O.I. H.G. S.X.
0.38 53.6 1615501_at At5g36920 - - 4e+0 At3g11660 NHL1 O.I. H.G. S.X.
0.38 53.6 1618926_at At5g36920 - - 6e-1 At5g22608 unknown protein O.I. H.G. S.X.
0.37 51.7 1607450_at At5g36920 hypothetical protein LOC100264463 - 1e+0 At5g11070 unknown protein O.I. H.G. S.X.
0.37 51.7 1621233_at At5g36920 hypothetical protein LOC100265883 - 2e-12 At2g16930 ribosomal protein L27 family protein O.I. H.G. S.X.
0.35 48.5 1622240_x_at At5g36920 - - 7e+0 At5g37580 - O.I. H.G. S.X.
0.34 46.8 1609080_at At5g36920 hypothetical protein LOC100265018 - 9e-21 At5g54440 unknown protein O.I. H.G. S.X.
0.34 46.8 1608405_at At5g36920 hypothetical protein LOC100243295 - 4e+0 At5g34881 unknown protein O.I. H.G. S.X.
0.33 45.7 1616843_at At5g36920 hypothetical protein LOC100252068 - 7e-17 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein O.I. H.G. S.X.
0.33 45.7 1612915_at At5g36920 hypothetical protein LOC100247677 - 8e-115 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) O.I. H.G. S.X.
0.32 43.1 1622849_at At5g36920 - - 5e-1 At1g54530 calcium-binding EF hand family protein O.I. H.G. S.X.
0.32 43.1 1610296_at At5g36920 - - 1e+0 At4g29290 LCR26 (Low-molecular-weight cysteine-rich 26) O.I. H.G. S.X.
0.31 41.3 1611505_at At5g36920 - - 8e-1 At3g61990 O-methyltransferase family 3 protein O.I. H.G. S.X.
0.31 41.3 1606648_at At5g36920 hypothetical protein LOC100257724 - 6e-37 At5g20060 phospholipase/carboxylesterase family protein O.I. H.G. S.X.
0.31 41.3 1622086_at At5g36920 hypothetical protein LOC100265288 - 1e-1 At2g20480 unknown protein O.I. H.G. S.X.
0.30 39.4 1608272_at At5g36920 hypothetical protein LOC100255032 - 3e-36 At3g56190 ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) O.I. H.G. S.X.
0.30 39.4 1622724_s_at At5g36920 hypothetical protein LOC100267009 - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.29 37.7 1619141_at At5g36920 - - 2e-1 At5g42655 - O.I. H.G. S.X.
0.28 37.7 1619095_s_at At5g36920 hypothetical protein LOC100257742 - 8e-8 At5g63280 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.27 34.0 1620741_at At5g36920 hypothetical protein LOC100243299 - 2e-2 At5g58270 STA1 (STARIK 1) O.I. H.G. S.X.
0.27 34.0 1612900_at At5g36920 hypothetical protein LOC100259949 - 5e+0 At5g44585 unknown protein O.I. H.G. S.X.
0.27 34.0 1619217_at At5g36920 - - 8e-80 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.27 34.0 1620211_at At5g36920 hypothetical protein LOC100261483 - 1e+0 At3g07565 DNA binding O.I. H.G. S.X.
0.26 32.0 1607847_at At5g36920 - - 6e-50 At2g32170 - O.I. H.G. S.X.
0.25 30.5 1611427_x_at At5g36920 - - 7e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.25 30.5 1607123_at At5g36920 - - 2e-9 At1g11870 SRS (SERYL-TRNA SYNTHETASE) O.I. H.G. S.X.
0.23 27.5 1610900_at At5g36920 hypothetical LOC100244581 - 2e-1 At1g78480 prenyltransferase/squalene oxidase repeat-containing protein O.I. H.G. S.X.
0.22 25.6 1609245_at At5g36920 hypothetical protein LOC100249819 - 1e-6 At4g29430 rps15ae (ribosomal protein S15A E) O.I. H.G. S.X.
0.19 20.9 1615727_at At5g36920 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.
0.17 18.2 1622059_at At5g36920 malate dehydrogenase - 3e-40 At3g15020 malate dehydrogenase (NAD), mitochondrial, putative O.I. H.G. S.X.
0.17 18.2 1618964_at At5g36920 hypothetical protein LOC100266690 - 1e-12 At3g03100 NADH:ubiquinone oxidoreductase family protein O.I. H.G. S.X.
0.17 18.2 1615943_at At5g36920 hypothetical protein LOC100266273 - 5e-14 At1g51980 mitochondrial processing peptidase alpha subunit, putative O.I. H.G. S.X.
0.11 11.3 1615419_s_at At5g36920 hypothetical protein LOC100244646 - 1e-10 At2g33220 - O.I. H.G. S.X.
0.08 8.5 1611098_at At5g36920 - - 1e-3 At5g51180 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	1617958_at	At5g36920	-	-	2e-1	At5g57655	xylose isomerase family protein	O.I.	H.G.	S.X.
0.55	77.3	1608540_at	At5g36920	-	-	1e-32	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.
0.52	73.9	1608554_at	At5g36920	-	-	4e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.
0.50	72.7	1620803_at	At5g36920	-	-	2e-5	At4g09070	-	O.I.	H.G.	S.X.
0.48	68.8	1615608_at	At5g36920	hypothetical protein LOC100248960 /// hypothetical protein LOC100255476	-	1e-22	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	O.I.	H.G.	S.X.
0.48	68.8	1608276_at	At5g36920	-	-	2e+0	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.
0.48	68.8	1619679_at	At5g36920	-	-	1e+0	At3g15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	O.I.	H.G.	S.X.
0.44	64.1	1615252_at	At5g36920	hypothetical protein LOC100265321	-	6e-12	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.43	61.5	1608061_at	At5g36920	-	-	6e+0	At1g12650	unknown protein	O.I.	H.G.	S.X.
0.42	60.1	1621419_at	At5g36920	similar to Os09g0515500	-	4e+0	At3g53370	DNA-binding S1FA family protein	O.I.	H.G.	S.X.
0.38	53.6	1615501_at	At5g36920	-	-	4e+0	At3g11660	NHL1	O.I.	H.G.	S.X.
0.38	53.6	1618926_at	At5g36920	-	-	6e-1	At5g22608	unknown protein	O.I.	H.G.	S.X.
0.37	51.7	1607450_at	At5g36920	hypothetical protein LOC100264463	-	1e+0	At5g11070	unknown protein	O.I.	H.G.	S.X.
0.37	51.7	1621233_at	At5g36920	hypothetical protein LOC100265883	-	2e-12	At2g16930	ribosomal protein L27 family protein	O.I.	H.G.	S.X.
0.35	48.5	1622240_x_at	At5g36920	-	-	7e+0	At5g37580	-	O.I.	H.G.	S.X.
0.34	46.8	1609080_at	At5g36920	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.
0.34	46.8	1608405_at	At5g36920	hypothetical protein LOC100243295	-	4e+0	At5g34881	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	1616843_at	At5g36920	hypothetical protein LOC100252068	-	7e-17	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.
0.33	45.7	1612915_at	At5g36920	hypothetical protein LOC100247677	-	8e-115	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.
0.32	43.1	1622849_at	At5g36920	-	-	5e-1	At1g54530	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.32	43.1	1610296_at	At5g36920	-	-	1e+0	At4g29290	LCR26 (Low-molecular-weight cysteine-rich 26)	O.I.	H.G.	S.X.
0.31	41.3	1611505_at	At5g36920	-	-	8e-1	At3g61990	O-methyltransferase family 3 protein	O.I.	H.G.	S.X.
0.31	41.3	1606648_at	At5g36920	hypothetical protein LOC100257724	-	6e-37	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.
0.31	41.3	1622086_at	At5g36920	hypothetical protein LOC100265288	-	1e-1	At2g20480	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	1608272_at	At5g36920	hypothetical protein LOC100255032	-	3e-36	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.
0.30	39.4	1622724_s_at	At5g36920	hypothetical protein LOC100267009	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.29	37.7	1619141_at	At5g36920	-	-	2e-1	At5g42655	-	O.I.	H.G.	S.X.
0.28	37.7	1619095_s_at	At5g36920	hypothetical protein LOC100257742	-	8e-8	At5g63280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.27	34.0	1620741_at	At5g36920	hypothetical protein LOC100243299	-	2e-2	At5g58270	STA1 (STARIK 1)	O.I.	H.G.	S.X.
0.27	34.0	1612900_at	At5g36920	hypothetical protein LOC100259949	-	5e+0	At5g44585	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	1619217_at	At5g36920	-	-	8e-80	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.
0.27	34.0	1620211_at	At5g36920	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.
0.26	32.0	1607847_at	At5g36920	-	-	6e-50	At2g32170	-	O.I.	H.G.	S.X.
0.25	30.5	1611427_x_at	At5g36920	-	-	7e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.25	30.5	1607123_at	At5g36920	-	-	2e-9	At1g11870	SRS (SERYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.
0.23	27.5	1610900_at	At5g36920	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	O.I.	H.G.	S.X.
0.22	25.6	1609245_at	At5g36920	hypothetical protein LOC100249819	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.
0.19	20.9	1615727_at	At5g36920	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.17	18.2	1622059_at	At5g36920	malate dehydrogenase	-	3e-40	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.
0.17	18.2	1618964_at	At5g36920	hypothetical protein LOC100266690	-	1e-12	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.
0.17	18.2	1615943_at	At5g36920	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.
0.11	11.3	1615419_s_at	At5g36920	hypothetical protein LOC100244646	-	1e-10	At2g33220	-	O.I.	H.G.	S.X.
0.08	8.5	1611098_at	At5g36920	-	-	1e-3	At5g51180	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	EBem09_SQ001_B21_s_at
Gene name
Homology with Arabidopsis	Similar to At5g36920: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.64
%ile	86.3

Co-expression analysis

Gene ID EBem09_SQ001_B21_s_at Gene name Homology with ArabidopsisSimilar to At5g36920: unknown protein (HF=2e+0) Module size 6 genes NF 0.64 %ile 86.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID EBem09_SQ001_B21_s_at

Gene name
Homology with Arabidopsis Similar to At5g36920: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.64

%ile 86.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays