CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBem09_SQ001_B21_s_at

Gene name
Homology with Arabidopsis Similar to At5g36920: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.64

%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 EBem09_SQ001_B21_s_at EBem09_SQ001_B21 - - 2e+0 At5g36920 unknown protein O.I. H.G. S.X.
0.71 87.1 0.98 rbags18e07_s_at rbags18e07 - - 4e-1 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) O.I. H.G. S.X.
0.67 84.7 0.98 Contig18703_at Contig18703 - - 1e+0 At5g48205 zinc ion binding O.I. H.G. S.X.
0.61 78.7 0.98 Contig7221_s_at Contig7221 - - 6e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.2 0.98 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) O.I. H.G. S.X.
0.44 58.9 0.98 HA12A08u_s_at HA12A08u - - 5e-2 At1g22780 PFL (POINTED FIRST LEAVES) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.98	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.
0.67	84.7	0.98	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	O.I.	H.G.	S.X.
0.61	78.7	0.98	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.47	62.2	0.98	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.
0.44	58.9	0.98	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.8 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7 99.5 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
10.8 99.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5 96.7 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1 94.1 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM161148 7% SWC rep3 GSE6990 Barley drought stress

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
22.8	99.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7	99.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
10.8	99.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.8	93.1	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.52323.1.S1_at, orthologous to the query gene, EBem09_SQ001_B21_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 98.7 TaAffx.52323.1.S1_at At5g36920 - - 4e+0 At5g27238 - O.I. H.G. S.X.
0.77 90.8 Ta.29473.2.S1_at At5g36920 - - 1e-3 At5g58110 ATPase activator/ chaperone binding O.I. H.G. S.X.
0.66 84.1 TaAffx.8774.1.S1_at At5g36920 - - 1e+1 At5g14130 peroxidase, putative O.I. H.G. S.X.
0.62 82.3 TaAffx.91595.1.S1_at At5g36920 - - 1e+0 At5g66590 allergen V5/Tpx-1-related family protein O.I. H.G. S.X.
0.62 82.3 TaAffx.62788.1.S1_at At5g36920 - - 4e+0 At1g71780 unknown protein O.I. H.G. S.X.
0.61 82.0 TaAffx.92350.1.S1_at At5g36920 - - 1e+0 At5g47306 unknown protein O.I. H.G. S.X.
0.60 81.0 TaAffx.85343.1.S1_at At5g36920 - - 4e+0 At5g34828 - O.I. H.G. S.X.
0.60 81.0 TaAffx.82014.1.S1_at At5g36920 - - 1e+0 At1g45063 copper ion binding / electron carrier O.I. H.G. S.X.
0.60 81.0 TaAffx.119601.1.S1_at At5g36920 - - 9e+0 At5g59950 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.59 79.8 Ta.2937.3.S1_at At5g36920 - - 1e+0 At5g42330 unknown protein O.I. H.G. S.X.
0.58 79.2 Ta.16180.1.A1_at At5g36920 - - 1e+0 At1g03410 2A6 O.I. H.G. S.X.
0.57 79.2 Ta.21581.1.S1_at At5g36920 - - 4e+0 At2g36460 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.55 76.8 Ta.5079.2.S1_x_at At5g36920 - - 3e-1 At3g16140 PSAH-1 (photosystem I subunit H-1) O.I. H.G. S.X.
0.53 74.9 TaAffx.58994.1.S1_at At5g36920 - - 4e+0 At3g52510 - O.I. H.G. S.X.
0.52 73.7 TaAffx.85428.1.S1_at At5g36920 - - 4e+0 At5g42000 ORMDL family protein O.I. H.G. S.X.
0.51 73.0 TaAffx.117373.1.S1_at At5g36920 - - 1e+0 At3g10400 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.51 73.0 TaAffx.120245.1.S1_at At5g36920 - - 1e-1 At4g17800 DNA-binding protein-related O.I. H.G. S.X.
0.50 72.4 TaAffx.24121.1.S1_at At5g36920 - - 2e-1 At1g11590 pectin methylesterase, putative O.I. H.G. S.X.
0.48 69.0 TaAffx.12517.1.S1_at At5g36920 - - 1e+0 At5g34581 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.48 69.0 Ta.6762.3.S1_at At5g36920 - - 1e+0 At5g61490 - O.I. H.G. S.X.
0.45 65.2 TaAffx.78855.1.S1_at At5g36920 - - 5e-2 At1g49930 - O.I. H.G. S.X.
0.44 64.5 TaAffx.51594.1.S1_at At5g36920 - - 1e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.
0.43 62.2 TaAffx.5596.1.S1_at At5g36920 - - 3e+0 At1g12250 thylakoid lumenal protein-related O.I. H.G. S.X.
0.42 60.9 Ta.16201.1.S1_at At5g36920 - - 3e+0 At5g57535 unknown protein O.I. H.G. S.X.
0.42 60.9 Ta.26652.1.A1_at At5g36920 - - 1e-3 At1g36050 unknown protein O.I. H.G. S.X.
0.42 60.9 TaAffx.132656.2.S1_at At5g36920 - - 1e+0 At1g76500 SOB3 (SUPPRESSOR OF PHYB-4#3) O.I. H.G. S.X.
0.40 58.4 TaAffx.55653.1.S1_at At5g36920 - - 1e+1 At4g20030 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.40 58.4 Ta.3911.2.S1_s_at At5g36920 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) O.I. H.G. S.X.
0.40 58.4 TaAffx.111590.1.S1_at At5g36920 - - 1e+0 At1g01990 - O.I. H.G. S.X.
0.40 58.4 TaAffx.35493.1.S1_at At5g36920 - - 4e+0 At5g07460 PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2) O.I. H.G. S.X.
0.39 56.1 Ta.3501.3.A1_at At5g36920 - - 3e-1 At5g08330 TCP family transcription factor, putative O.I. H.G. S.X.
0.39 56.1 Ta.6759.2.S1_x_at At5g36920 - - 2e+0 At5g63310 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) O.I. H.G. S.X.
0.39 56.1 Ta.18019.2.S1_at At5g36920 - - 1e+0 At1g32700 zinc-binding family protein O.I. H.G. S.X.
0.39 56.1 TaAffx.85941.1.S1_at At5g36920 - - 2e+1 At5g23760 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.38 54.7 TaAffx.6157.1.S1_at At5g36920 - - 4e+0 At2g42930 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.36 51.9 TaAffx.80426.1.S1_at At5g36920 - - 4e-1 At2g12935 unknown protein O.I. H.G. S.X.
0.34 48.1 TaAffx.111311.1.S1_at At5g36920 - - 1e+0 At1g61940 AtTLP4 (TUBBY LIKE PROTEIN 4) O.I. H.G. S.X.
0.30 40.9 TaAffx.3664.1.S1_at At5g36920 - - 2e+0 At2g47710 universal stress protein (USP) family protein O.I. H.G. S.X.
0.29 39.2 Ta.6759.2.S1_at At5g36920 - - 2e+0 At5g63310 NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.93	98.7	TaAffx.52323.1.S1_at	At5g36920	-	-	4e+0	At5g27238	-	O.I.	H.G.	S.X.
0.77	90.8	Ta.29473.2.S1_at	At5g36920	-	-	1e-3	At5g58110	ATPase activator/ chaperone binding	O.I.	H.G.	S.X.
0.66	84.1	TaAffx.8774.1.S1_at	At5g36920	-	-	1e+1	At5g14130	peroxidase, putative	O.I.	H.G.	S.X.
0.62	82.3	TaAffx.91595.1.S1_at	At5g36920	-	-	1e+0	At5g66590	allergen V5/Tpx-1-related family protein	O.I.	H.G.	S.X.
0.62	82.3	TaAffx.62788.1.S1_at	At5g36920	-	-	4e+0	At1g71780	unknown protein	O.I.	H.G.	S.X.
0.61	82.0	TaAffx.92350.1.S1_at	At5g36920	-	-	1e+0	At5g47306	unknown protein	O.I.	H.G.	S.X.
0.60	81.0	TaAffx.85343.1.S1_at	At5g36920	-	-	4e+0	At5g34828	-	O.I.	H.G.	S.X.
0.60	81.0	TaAffx.82014.1.S1_at	At5g36920	-	-	1e+0	At1g45063	copper ion binding / electron carrier	O.I.	H.G.	S.X.
0.60	81.0	TaAffx.119601.1.S1_at	At5g36920	-	-	9e+0	At5g59950	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.
0.59	79.8	Ta.2937.3.S1_at	At5g36920	-	-	1e+0	At5g42330	unknown protein	O.I.	H.G.	S.X.
0.58	79.2	Ta.16180.1.A1_at	At5g36920	-	-	1e+0	At1g03410	2A6	O.I.	H.G.	S.X.
0.57	79.2	Ta.21581.1.S1_at	At5g36920	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.
0.55	76.8	Ta.5079.2.S1_x_at	At5g36920	-	-	3e-1	At3g16140	PSAH-1 (photosystem I subunit H-1)	O.I.	H.G.	S.X.
0.53	74.9	TaAffx.58994.1.S1_at	At5g36920	-	-	4e+0	At3g52510	-	O.I.	H.G.	S.X.
0.52	73.7	TaAffx.85428.1.S1_at	At5g36920	-	-	4e+0	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.
0.51	73.0	TaAffx.117373.1.S1_at	At5g36920	-	-	1e+0	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.51	73.0	TaAffx.120245.1.S1_at	At5g36920	-	-	1e-1	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.
0.50	72.4	TaAffx.24121.1.S1_at	At5g36920	-	-	2e-1	At1g11590	pectin methylesterase, putative	O.I.	H.G.	S.X.
0.48	69.0	TaAffx.12517.1.S1_at	At5g36920	-	-	1e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.48	69.0	Ta.6762.3.S1_at	At5g36920	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.
0.45	65.2	TaAffx.78855.1.S1_at	At5g36920	-	-	5e-2	At1g49930	-	O.I.	H.G.	S.X.
0.44	64.5	TaAffx.51594.1.S1_at	At5g36920	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.
0.43	62.2	TaAffx.5596.1.S1_at	At5g36920	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.
0.42	60.9	Ta.16201.1.S1_at	At5g36920	-	-	3e+0	At5g57535	unknown protein	O.I.	H.G.	S.X.
0.42	60.9	Ta.26652.1.A1_at	At5g36920	-	-	1e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.
0.42	60.9	TaAffx.132656.2.S1_at	At5g36920	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.55653.1.S1_at	At5g36920	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.40	58.4	Ta.3911.2.S1_s_at	At5g36920	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.111590.1.S1_at	At5g36920	-	-	1e+0	At1g01990	-	O.I.	H.G.	S.X.
0.40	58.4	TaAffx.35493.1.S1_at	At5g36920	-	-	4e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.
0.39	56.1	Ta.3501.3.A1_at	At5g36920	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.39	56.1	Ta.6759.2.S1_x_at	At5g36920	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.
0.39	56.1	Ta.18019.2.S1_at	At5g36920	-	-	1e+0	At1g32700	zinc-binding family protein	O.I.	H.G.	S.X.
0.39	56.1	TaAffx.85941.1.S1_at	At5g36920	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.38	54.7	TaAffx.6157.1.S1_at	At5g36920	-	-	4e+0	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.
0.36	51.9	TaAffx.80426.1.S1_at	At5g36920	-	-	4e-1	At2g12935	unknown protein	O.I.	H.G.	S.X.
0.34	48.1	TaAffx.111311.1.S1_at	At5g36920	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.
0.30	40.9	TaAffx.3664.1.S1_at	At5g36920	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.
0.29	39.2	Ta.6759.2.S1_at	At5g36920	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	EBem09_SQ001_B21_s_at
Gene name
Homology with Arabidopsis	Similar to At5g36920: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.64
%ile	86.3

Co-expression analysis

Gene ID EBem09_SQ001_B21_s_at Gene name Homology with ArabidopsisSimilar to At5g36920: unknown protein (HF=2e+0) Module size 6 genes NF 0.64 %ile 86.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaVitis_viniferaZea_mays

Gene ID EBem09_SQ001_B21_s_at

Gene name
Homology with Arabidopsis Similar to At5g36920: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.64

%ile 86.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays