CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBem09_SQ001_B21_s_at

Gene name
Homology with Arabidopsis Similar to At5g36920: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.64

%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 EBem09_SQ001_B21_s_at EBem09_SQ001_B21 - - 2e+0 At5g36920 unknown protein O.I. H.G. S.X.
0.71 87.1 0.98 rbags18e07_s_at rbags18e07 - - 4e-1 At3g58170 BS14A (BET1P/SFT1P-LIKE PROTEIN 14A) O.I. H.G. S.X.
0.67 84.7 0.98 Contig18703_at Contig18703 - - 1e+0 At5g48205 zinc ion binding O.I. H.G. S.X.
0.61 78.7 0.98 Contig7221_s_at Contig7221 - - 6e+0 At5g47610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.2 0.98 Contig19492_at Contig19492 - - 5e-1 At5g41340 UBC4 (UBIQUITIN CONJUGATING ENZYME 4) O.I. H.G. S.X.
0.44 58.9 0.98 HA12A08u_s_at HA12A08u - - 5e-2 At1g22780 PFL (POINTED FIRST LEAVES) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.8 99.8 GSM261042 before 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.7 99.5 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
10.8 99.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM261043 before 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5 96.7 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.2 96.3 GSM261044 before 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1 94.1 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
2.8 93.1 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
2.6 92.3 GSM161148 7% SWC rep3 GSE6990 Barley drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.127916.1.A1_at, orthologous to the query gene, EBem09_SQ001_B21_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.34 58.3 PtpAffx.127916.1.A1_at At5g36920 - - 5e+0 At5g07060 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.27 47.1 PtpAffx.215770.1.S1_at At5g36920 hypothetical protein - 2e+0 At3g62760 ATGSTF13 O.I. H.G. S.X.
0.23 40.5 Ptp.3055.1.S1_at At5g36920 - - 6e+0 At5g43860 ATCLH2 O.I. H.G. S.X.
0.21 36.5 PtpAffx.216420.1.S1_at At5g36920 hypothetical protein - 2e+0 At4g08690 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.202161.1.S1_at At5g36920 hypothetical protein - 2e+0 At3g29740 protein binding O.I. H.G. S.X.
0.11 18.1 PtpAffx.219869.1.S1_at At5g36920 hypothetical protein - 1e-1 At3g27416 unknown protein O.I. H.G. S.X.
0.05 8.3 PtpAffx.218845.1.S1_at At5g36920 hypothetical protein - 9e+0 At3g56500 serine-rich protein-related O.I. H.G. S.X.
0.03 5.2 PtpAffx.211545.1.S1_at At5g36920 hypothetical protein - 7e-2 At4g03110 RNA-binding protein, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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