Co-expression analysis

Gene ID	EBem08_SQ002_D16_s_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=2e-4)
Module size	7 genes
NF	0.45
%ile	62.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.96	EBem08_SQ002_D16_s_at	EBem08_SQ002_D16	-	-	2e-4	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig4268_s_at	Contig4268	-	-	3e-49	At5g23250	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig5696_at	Contig5696	-	-	7e-3	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig4366_at	Contig4366	-	-	5e-16	At5g49810	MMT	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig3205_at	Contig3205	-	-	3e-7	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig2575_s_at	Contig2575	-	-	2e-1	At4g27540	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig3920_at	Contig3920	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.3	96.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.9	95.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5350.1.S1_s_at, orthologous to the query gene, EBem08_SQ002_D16_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	Gma.5350.1.S1_s_at	At5g60460	-	-	6e-18	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	Gma.2904.1.S1_at	At5g60460	-	-	1e-1	At3g43520	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	GmaAffx.91136.1.S1_s_at	At5g60460	-	-	2e-36	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.7245.1.S1_at	At5g60460	-	-	3e-35	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.18017.2.S1_s_at	At5g60460	-	-	6e-21	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.90455.1.A1_s_at	At5g60460	-	-	3e-26	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	O.I.	H.G.	S.X.	Please select
0.54	74.8	GmaAffx.80265.1.S1_at	At5g60460	-	-	3e-31	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.11048.1.S1_at	At5g60460	-	-	2e-40	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.4710.1.S1_x_at	At5g60460	-	-	2e-21	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.11262.1.S1_at	At5g60460	-	-	2e-27	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.11262.1.S1_x_at	At5g60460	-	-	2e-27	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.91182.1.S1_s_at	At5g60460	-	-	6e-83	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.1912.2.S1_a_at	At5g60460	-	-	5e-19	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.11295.2.S1_x_at	At5g60460	-	-	2e-17	At5g56670	40S ribosomal protein S30 (RPS30C)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.91135.1.S1_s_at	At5g60460	-	-	4e-13	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage