CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBem08_SQ002_D16_s_at

Gene name
Homology with Arabidopsis Similar to At5g60460: sec61beta family protein (HF=2e-4)

Module size 7 genes

NF 0.45

%ile 62.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.3 0.96 EBem08_SQ002_D16_s_at EBem08_SQ002_D16 - - 2e-4 At5g60460 sec61beta family protein O.I. H.G. S.X.
0.50 66.9 0.96 Contig4268_s_at Contig4268 - - 3e-49 At5g23250 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative O.I. H.G. S.X.
0.50 66.9 0.97 Contig5696_at Contig5696 - - 7e-3 At5g48335 unknown protein O.I. H.G. S.X.
0.48 63.2 0.96 Contig4366_at Contig4366 - - 5e-16 At5g49810 MMT O.I. H.G. S.X.
0.47 62.2 0.96 Contig3205_at Contig3205 - - 3e-7 At4g14710 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding O.I. H.G. S.X.
0.35 45.1 0.96 Contig2575_s_at Contig2575 - - 2e-1 At4g27540 PRA1.H (PRENYLATED RAB ACCEPTOR 1.H) O.I. H.G. S.X.
0.28 35.5 0.96 Contig3920_at Contig3920 - - 3e-21 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.5 98.8 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.4 98.8 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.5 97.6 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.7 96.9 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.5 96.7 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.3 96.4 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.1 96.2 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.9 95.8 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g60460, orthologous to the query gene, EBem08_SQ002_D16_s_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At5g60460 836167 sec61beta family protein F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB O.I. H.G. S.X.
0.50 65.3 At1g70670 843404 caleosin-related family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.33 38.1 At4g01410 828166 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. H.G. S.X.
0.33 38.1 At4g32290 829363 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB O.I. H.G. S.X.
0.25 22.6 At2g05910 815143 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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