Co-expression analysis

Gene ID EBem08_SQ002_D16_s_at
Gene name
Homology with ArabidopsisSimilar to At5g60460: sec61beta family protein (HF=2e-4)
Module size 7 genes
NF 0.45
%ile 62.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.30.96EBem08_SQ002_D16_s_atEBem08_SQ002_D16--2e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.5066.90.96Contig4268_s_atContig4268--3e-49At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.
0.5066.90.97Contig5696_atContig5696--7e-3At5g48335unknown proteinO.I.H.G.S.X.
0.4863.20.96Contig4366_atContig4366--5e-16At5g49810MMTO.I.H.G.S.X.
0.4762.20.96Contig3205_atContig3205--3e-7At4g14710acireductone dioxygenase [iron(II)-requiring]/ metal ion bindingO.I.H.G.S.X.
0.3545.10.96Contig2575_s_atContig2575--2e-1At4g27540PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)O.I.H.G.S.X.
0.2835.50.96Contig3920_atContig3920--3e-21At5g01410RSR4 (REDUCED SUGAR RESPONSE 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.8GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.396.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.995.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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