Co-expression analysis

Gene ID	EBem06_SQ003_C15_x_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=9e-1)
Module size	6 genes
NF	0.03
%ile	3.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.84	EBem06_SQ003_C15_x_at	EBem06_SQ003_C15	-	-	9e-1	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	HU13P05r_at	HU13P05r	-	-	1e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.90	Contig9006_at	Contig9006	-	-	6e-5	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.87	Contig11496_at	Contig11496	-	-	5e-11	At1g23280	MAK16 protein-related	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.90	Contig16560_at	Contig16560	-	-	8e-2	At1g69210	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.88	Contig2515_at	Contig2515	-	-	6e-54	At1g68010	HPR	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	96.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.6	95.3	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.4	94.8	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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