Co-expression analysis

Gene ID	EBem06_SQ002_J24_at
Gene name
Homology with Arabidopsis	Similar to At2g43360: BIO2 (BIOTIN AUXOTROPH 2) (HF=8e-1)
Module size	6 genes
NF	0.09
%ile	11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.86	EBem06_SQ002_J24_at	EBem06_SQ002_J24	-	-	8e-1	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	HT09M11u_at	HT09M11u	-	-	7e-1	At5g14105	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	HVSMEg0011L24r2_at	HVSMEg0011L24r2	-	-	2e+1	At5g53205	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	HT10O07u_at	HT10O07u	-	-	5e+0	At4g21190	emb1417 (embryo defective 1417)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.92	HT13G05r_at	HT13G05r	-	-	3e-10	At3g13550	FUS9 (FUSCA 9)	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.92	Contig18094_at	Contig18094	-	-	9e-2	At1g73000	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.4	97.5	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.6	96.8	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.3	96.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.0	96.0	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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