Co-expression analysis

Gene ID	EBem05_SQ002_E15_at
Gene name
Homology with Arabidopsis	Similar to At5g15610: proteasome family protein (HF=7e-1)
Module size	14 genes
NF	0.26
%ile	32.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.84	EBem05_SQ002_E15_at	EBem05_SQ002_E15	-	-	7e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.90	Contig10409_s_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.89	HV_CEb0010N06r2_at	HV_CEb0010N06r2	-	-	1e+0	At2g34270	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig7593_at	Contig7593	-	-	6e-7	At3g61070	PEX11E	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.91	Contig11826_at	Contig11826	-	-	3e-5	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig12744_at	Contig12744	-	-	1e+0	At3g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.91	Contig18190_at	Contig18190	-	-	1e+0	At2g02390	ATGSTZ1 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE ZETA 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig15036_at	Contig15036	-	-	1e-1	At3g07090	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig14821_at	Contig14821	-	-	4e-2	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.90	Contig16317_s_at	Contig16317	-	-	4e-7	At1g42440	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.93	Contig4967_s_at	Contig4967	-	-	5e-13	At1g75440	UBC16 (ubiquitin-conjugating enzyme 16)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.94	Contig10107_at	Contig10107	-	-	2e-1	At1g17070	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.93	Contig15755_at	Contig15755	-	-	6e-1	At3g52920	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.90	Contig18909_at	Contig18909	-	-	3e+1	At5g06610	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.2	98.0	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.2	94.3	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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