CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID EBem04_SQ003_H15_at

Gene name
Homology with Arabidopsis Similar to At5g33806: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.59

%ile 81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.
0.67 84.7 0.97 HV_CEa0014H05r2_at HV_CEa0014H05r2 - - 3e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.60 77.3 0.97 9507414_R_4264-4644_at 9507414_R_4264-4644 - - 1e+1 At5g06320 NHL3 O.I. H.G. S.X.
0.56 74.3 0.97 HS05N06r_at HS05N06r - - 9e-1 At1g79110 protein binding / zinc ion binding O.I. H.G. S.X.
0.46 61.0 0.97 Contig10097_at Contig10097 - - 4e-1 At3g16450 jacalin lectin family protein O.I. H.G. S.X.
0.37 47.9 0.96 V00087.1_at V00087.1 - - 3e-1 At5g43525 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.97	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.
0.60	77.3	0.97	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.
0.56	74.3	0.97	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.46	61.0	0.97	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.
0.37	47.9	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.95	HS18B19u_x_at	HS18B19u	-	-	3e+0	At1g63840	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.83	94.0	0.94	HU10K23u_at	HU10K23u	-	-	1e+0	At2g25570	binding	O.I.	H.G.	S.X.
0.80	92.5	0.95	HVSMEa0011N23r2_at	HVSMEa0011N23r2	-	-	4e+0	At1g04260	MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)	O.I.	H.G.	S.X.
0.80	92.5	0.96	Contig18499_at	Contig18499	-	-	1e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.
0.80	92.5	0.96	HA31O01r_at	HA31O01r	-	-	3e+0	At2g10970	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.80	92.5	0.97	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.77	90.8	0.91	HA10F20u_at	HA10F20u	-	-	4e+0	At2g42240	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.77	90.8	0.95	Contig1926_at	Contig1926	-	-	9e-87	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.
0.77	90.8	0.95	HY09H20u_at	HY09H20u	-	-	5e-1	At1g52155	unknown protein	O.I.	H.G.	S.X.
0.77	90.8	0.96	HS18F13u_at	HS18F13u	-	-	2e-1	At5g03130	unknown protein	O.I.	H.G.	S.X.
0.75	89.5	0.96	rbaal4l02_at	rbaal4l02	-	-	6e-3	At5g09640	SCPL19	O.I.	H.G.	S.X.
0.75	89.5	0.96	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.73	88.7	0.93	Contig18910_at	Contig18910	-	-	4e+0	At3g18850	LPAT5	O.I.	H.G.	S.X.
0.73	88.7	0.94	HV_CEa0013H09r2_at	HV_CEa0013H09r2	-	-	2e-1	At5g62120	ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23)	O.I.	H.G.	S.X.
0.73	88.7	0.95	MitoContig13_at	MitoContig13	-	-	3e+0	At3g27430	PBB1	O.I.	H.G.	S.X.
0.73	88.7	0.95	Contig26527_at	Contig26527	-	-	8e-1	At2g31930	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.95	Contig15688_at	Contig15688	-	-	8e+0	At4g11780	unknown protein	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig1829_at	Contig1829	-	-	1e-2	At2g15490	UGT73B4 (UDP-GLYCOSYLTRANSFERASE 73B4)	O.I.	H.G.	S.X.
0.73	88.7	0.96	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.71	87.1	0.96	HF14E22r_x_at	HF14E22r	-	-	7e-1	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	O.I.	H.G.	S.X.
0.71	87.1	0.96	HZ55F22r_at	HZ55F22r	-	-	4e+0	At4g18740	transcription termination factor	O.I.	H.G.	S.X.
0.71	87.1	0.96	rbaal31o11_x_at	rbaal31o11	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	O.I.	H.G.	S.X.
0.71	87.1	0.96	HD05M20r_at	HD05M20r	-	-	7e-1	At4g18430	AtRABA1e (Arabidopsis Rab GTPase homolog A1e)	O.I.	H.G.	S.X.
0.71	87.1	0.96	HVSMEf0019H01r2_at	HVSMEf0019H01r2	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.
0.71	87.1	0.95	Contig21090_at	Contig21090	-	-	1e+0	At3g06760	-	O.I.	H.G.	S.X.
0.71	87.1	0.95	EBro02_SQ001_G12_at	EBro02_SQ001_G12	-	-	6e-2	At2g24190	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.92	Contig22644_at	Contig22644	-	-	9e-1	At5g27440	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.92	HVSMEf0001F23r2_at	HVSMEf0001F23r2	-	-	9e+0	At4g26030	transcription factor	O.I.	H.G.	S.X.
0.67	84.7	0.93	HVSMEa0011L07r2_at	HVSMEa0011L07r2	-	-	1e+1	At5g37270	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.67	84.7	0.93	rbaal36e18_at	rbaal36e18	-	-	3e-1	At3g58280	-	O.I.	H.G.	S.X.
0.67	84.7	0.93	HZ01L14u_at	HZ01L14u	-	-	1e+0	Atmg00550	-	O.I.	H.G.	S.X.
0.67	84.7	0.93	HU08H15u_at	HU08H15u	-	-	4e+0	At4g36160	ANAC076 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 76)	O.I.	H.G.	S.X.
0.67	84.7	0.93	Contig11626_at	Contig11626	-	-	4e-2	At3g50550	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.94	Contig24017_at	Contig24017	-	-	1e-6	At4g17740	C-terminal processing protease, putative	O.I.	H.G.	S.X.
0.67	84.7	0.94	HM04C22u_at	HM04C22u	-	-	5e+0	At3g20000	TOM40	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig17598_at	Contig17598	-	-	3e-1	At5g08050	-	O.I.	H.G.	S.X.
0.67	84.7	0.95	HVSMEf0020M22r2_at	HVSMEf0020M22r2	-	-	3e+0	At1g34770	MAGE-8 antigen-related	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig17471_at	Contig17471	-	-	7e-1	At1g76820	GTP binding / GTPase	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig7390_at	Contig7390	-	-	5e-8	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	HT05K24u_at	HT05K24u	-	-	4e+0	At4g26520	fructose-bisphosphate aldolase, cytoplasmic	O.I.	H.G.	S.X.
0.67	84.7	0.95	HVSMEi0020D12r2_s_at	HVSMEi0020D12r2	-	-	2e+0	At4g33960	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	HV_CEb0021G08r2_at	HV_CEb0021G08r2	-	-	2e-2	At4g04510	protein kinase family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	EBro08_SQ008_B03_at	EBro08_SQ008_B03	-	-	9e-1	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig2379_s_at	Contig2379	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	HD03N13u_at	HD03N13u	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.96	Contig24225_at	Contig24225	-	-	2e-12	At3g10360	APUM4 (Arabidopsis Pumilio 4)	O.I.	H.G.	S.X.
0.67	84.7	0.96	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.
0.63	80.3	0.96	HVSMEg0004N03r2_at	HVSMEg0004N03r2	-	-	2e+0	At3g50360	ATCEN2 (CENTRIN2)	O.I.	H.G.	S.X.
0.63	80.3	0.96	EBro08_SQ007_C12_at	EBro08_SQ007_C12	-	-	9e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.63	80.3	0.96	HT06M11u_at	HT06M11u	-	-	1e+1	Atcg01310	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.6 99.0 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.5 98.8 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
7.3 98.5 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.6 96.8 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.6	99.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	EBem04_SQ003_H15_at
Gene name
Homology with Arabidopsis	Similar to At5g33806: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.59
%ile	81.1

Co-expression analysis

Gene ID EBem04_SQ003_H15_at Gene name Homology with ArabidopsisSimilar to At5g33806: unknown protein (HF=3e+0) Module size 6 genes NF 0.59 %ile 81.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID EBem04_SQ003_H15_at

Gene name
Homology with Arabidopsis Similar to At5g33806: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.59

%ile 81.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays