Co-expression analysis

Gene ID	EBem04_SQ003_H15_at
Gene name
Homology with Arabidopsis	Similar to At5g33806: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.59
%ile	81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
8.5	98.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.3	98.5	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.3	97.4	GSM282022	Malting_day4_Merit_rep4	GSE11200	Expression data from malting barley seeds
5.0	97.2	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the grape gene, 1618073_at, orthologous to the query gene, EBem04_SQ003_H15_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	1618073_at	At5g33806	hypothetical protein LOC100252995	-	2e+0	At3g61190	BAP1 (BON ASSOCIATION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.10	10.3	1607923_at	At5g33806	hypothetical protein LOC100245744	-	4e-1	At5g50690	AtHSD7 (hydroxysteroid dehydrogenase 7)	O.I.	H.G.	S.X.	Please select
0.03	4.2	1607002_at	At5g33806	hypothetical protein LOC100251379	-	8e-96	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.02	3.2	1619373_at	At5g33806	hypothetical protein LOC100258412	-	5e-50	At5g43940	HOT5 (sensitive to hot temperatures 5)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1612946_at	At5g33806	hypothetical protein LOC100244660	-	2e-18	At4g25360	-	O.I.	H.G.	S.X.	Please select
0.01	2.1	1621174_at	At5g33806	hypothetical protein LOC100248177	-	5e-19	At1g33490	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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