Co-expression analysis

Gene ID EBan01_SQ002_J20_at
Gene name
Homology with ArabidopsisSimilar to At3g15620: UVR3 (UV REPAIR DEFECTIVE 3) (HF=1e-3)
Module size 30 genes
NF 0.61
%ile 83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9498.90.94EBan01_SQ002_J20_atEBan01_SQ002_J20--1e-3At3g15620UVR3 (UV REPAIR DEFECTIVE 3)O.I.H.G.S.X.
0.7891.20.95HZ55F22r_atHZ55F22r--4e+0At4g18740transcription termination factorO.I.H.G.S.X.
0.7187.10.95EBro08_SQ004_N23_atEBro08_SQ004_N23--6e-5At1g76100PETE1 (PLASTOCYANIN 1)O.I.H.G.S.X.
0.7187.10.95Contig20777_atContig20777--1e-1At3g47640basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6784.70.95Contig21937_atContig21937--3e+0At5g08280HEMC (HYDROXYMETHYLBILANE SYNTHASE)O.I.H.G.S.X.
0.6784.70.95Contig24225_atContig24225--2e-12At3g10360APUM4 (Arabidopsis Pumilio 4)O.I.H.G.S.X.
0.6681.50.96HY02C19u_atHY02C19u--5e+0At4g15610integral membrane family proteinO.I.H.G.S.X.
0.6681.50.96HD03N13u_atHD03N13u--2e+1At5g42591unknown proteinO.I.H.G.S.X.
0.6581.40.96HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.6480.90.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.
0.6480.90.96HT06M11u_atHT06M11u--1e+1Atcg01310-O.I.H.G.S.X.
0.6480.90.95Contig25667_x_atContig25667--7e-1At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.6380.30.95Contig18499_atContig18499--1e+0At5g28750thylakoid assembly protein, putativeO.I.H.G.S.X.
0.6077.30.95HVSMEf0019I03r2_s_atHVSMEf0019I03r2--4e+0At3g57770protein kinase, putativeO.I.H.G.S.X.
0.6077.30.95HVSMEl0006C17r2_x_atHVSMEl0006C17r2--1e+0At4g32090galactosyltransferaseO.I.H.G.S.X.
0.6077.30.95Contig23272_atContig23272--2e+1At5g44550integral membrane family proteinO.I.H.G.S.X.
0.5975.80.952623978_R_1403-2212_at2623978_R_1403-2212--2e+0At3g16350myb family transcription factorO.I.H.G.S.X.
0.5874.90.96baal1j07_atbaal1j07--5e-15At4g3080040S ribosomal protein S11 (RPS11B)O.I.H.G.S.X.
0.5874.90.969507414_R_4264-4644_at9507414_R_4264-4644--1e+1At5g06320NHL3O.I.H.G.S.X.
0.5674.30.95HVSMEm0004M18r2_atHVSMEm0004M18r2--2e+0At3g09970calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.
0.5674.30.96V00087.1_atV00087.1--3e-1At5g43525-O.I.H.G.S.X.
0.5674.30.96Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.5572.00.95EBro08_SQ008_B03_atEBro08_SQ008_B03--9e-1At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.5572.00.96Contig12986_atContig12986--7e-13At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.5470.30.96HA31G21r_atHA31G21r--2e+0At5g17190unknown proteinO.I.H.G.S.X.
0.5470.30.96Contig14886_atContig14886--1e+0At3g07860unknown proteinO.I.H.G.S.X.
0.5369.70.96HY06F24u_x_atHY06F24u--1e+1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.5167.50.96S0000800072B12F1_atS0000800072B12F1--9e+0At1g07476unknown proteinO.I.H.G.S.X.
0.3950.50.96HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.3950.50.96HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.998.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.798.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.997.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
4.096.0GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.194.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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