Co-expression analysis

Gene ID Contig9960_at
Gene name aluminum activated citrate transporter
Homology with ArabidopsisSimilar to At3g08040: FRD3 (FERRIC REDUCTASE DEFECTIVE 3) (HF=4e-2)
Module size 6 genes
NF 0.56
%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.95Contig9960_atContig9960aluminum activated citrate transporter-4e-2At3g08040FRD3 (FERRIC REDUCTASE DEFECTIVE 3)O.I.H.G.S.X.
0.7790.80.95Contig13809_atContig13809--3e-2At2g23420NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)O.I.H.G.S.X.
0.6784.70.95Contig25618_atContig25618--4e-1At3g43120auxin-responsive protein-relatedO.I.H.G.S.X.
0.4356.40.94Contig12644_atContig12644--1e+0At4g02430pre-mRNA splicing factor, putative / SR1 protein, putativeO.I.H.G.S.X.
0.4356.40.95Contig9244_atContig9244--3e-16At4g26750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4053.10.94Contig24801_atContig24801--2e+0At3g50640unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.4100.0GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.599.2GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.297.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.296.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.893.1GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM282037Malting_day1_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.491.4GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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