Co-expression analysis

Gene ID Contig9943_at
Gene name
Homology with ArabidopsisSimilar to At2g20840: secretory carrier membrane protein (SCAMP) family protein (HF=2e-19)
Module size 6 genes
NF 0.10
%ile 12.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.92Contig9943_atContig9943--2e-19At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.4053.10.95Contig9172_s_atContig9172--4e-4At3g62020GLP10 (GERMIN-LIKE PROTEIN 10)O.I.H.G.S.X.
0.1818.20.93Contig25517_atContig25517--4e-1At5g58970ATUCP2 (UNCOUPLING PROTEIN 2)O.I.H.G.S.X.
0.075.80.95Contig1813_s_atContig1813--1e-121At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.043.40.95Contig4172_atContig4172--2e-2At3g52090NRPB11O.I.H.G.S.X.
0.032.60.93Contig1013_s_atContig1013--2e-149At2g39730RCA (RUBISCO ACTIVASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.998.7GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
7.498.5GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.798.3GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.298.0GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
6.097.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.897.8GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.497.5GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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