CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9920_at

Gene name
Homology with Arabidopsis Similar to At3g15095: unknown protein (HF=7e-1)

Module size 7 genes

NF 0.40

%ile 55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.5 0.87 Contig9920_at Contig9920 - - 7e-1 At3g15095 unknown protein O.I. H.G. S.X.
0.53 69.7 0.87 Contig22098_at Contig22098 - - 4e-2 At1g01020 ARV1 O.I. H.G. S.X.
0.50 66.9 0.89 Contig22141_s_at Contig22141 - - 3e+0 At3g07440 unknown protein O.I. H.G. S.X.
0.50 66.9 0.90 Contig5609_at Contig5609 - - 5e+0 At2g01905 CYCJ18 (CYCLIN J18) O.I. H.G. S.X.
0.36 47.1 0.92 Contig2163_at Contig2163 - - 3e-1 At2g04046 - O.I. H.G. S.X.
0.32 40.3 0.89 HV08D21r_at HV08D21r - - 6e+0 At3g29305 unknown protein O.I. H.G. S.X.
0.20 21.1 0.88 Contig6578_at Contig6578 - - 1e-27 At1g64650 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 97.3 GSM372945 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.9 97.1 GSM261027 ABA-Late-rep1 GSE10328 ABA experiment
4.5 96.7 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4 96.6 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
4.2 96.3 GSM372954 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM372971 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM372946 genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0 96.0 GSM372950 genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0 96.0 GSM372969 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C9000101_s_at, orthologous to the query gene, Contig9920_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 80.7 PsAffx.C9000101_s_at At3g15095 - - 3e+0 At5g22140 pyridine nucleotide-disulphide oxidoreductase family protein O.I. H.G. S.X.
0.60 80.7 PsAffx.C216000017_at At3g15095 - - 4e-2 At5g66880 SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3) O.I. H.G. S.X.
0.53 74.2 PsAffx.CL215Contig1_at At3g15095 - - 5e+0 At3g28590 unknown protein O.I. H.G. S.X.
0.44 63.3 PsAffx.psMA016xG14f_at At3g15095 - - 4e+0 At5g40620 unknown protein O.I. H.G. S.X.
0.29 39.0 PsAffx.C128000018_at At3g15095 - - 8e-1 At1g71970 unknown protein O.I. H.G. S.X.
0.03 5.8 PsAffx.CL2455Contig1_at At3g15095 - - 2e+0 At5g07490 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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