Co-expression analysis

Gene ID Contig9918_at
Gene name
Homology with ArabidopsisSimilar to At2g22540: SVP (SHORT VEGETATIVE PHASE) (HF=4e-2)
Module size 7 genes
NF 0.40
%ile 55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.93Contig9918_atContig9918--4e-2At2g22540SVP (SHORT VEGETATIVE PHASE)O.I.H.G.S.X.
0.5975.80.93Contig7695_s_atContig7695--1e+0At3g45760unknown proteinO.I.H.G.S.X.
0.5572.00.93Contig6665_s_atContig6665--1e+0At5g37200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5066.90.93Contig15278_atContig15278--1e+0At5g48205zinc ion bindingO.I.H.G.S.X.
0.4255.20.93Contig11840_s_atContig11840--3e-2At2g25720unknown proteinO.I.H.G.S.X.
0.1412.90.93Contig10941_atContig10941--2e-1At3g48340cysteine-type endopeptidase/ cysteine-type peptidaseO.I.H.G.S.X.
0.1412.90.93Contig21329_atContig21329--1e-1At5g47229unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.599.5GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.899.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.998.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.897.8GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.796.9GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.696.8GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.795.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.993.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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