Co-expression analysis

Gene ID Contig9902_at
Gene name
Homology with ArabidopsisSimilar to At5g35170: adenylate kinase family protein (HF=2e+0)
Module size 7 genes
NF 0.62
%ile 83.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.96Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinO.I.H.G.S.X.
0.7187.10.95Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.6784.70.96Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.
0.5774.90.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.5572.00.97Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.4863.20.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.
0.4458.90.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
7.498.5GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.198.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.797.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.497.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.097.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.997.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.796.9GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.496.6GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610128_at, orthologous to the query gene, Contig9902_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.71610128_atAt5g35170--6e-23At5g47840AMK2 (Adenosine monophosphate kinase)O.I.H.G.S.X.
0.7390.81609299_atAt5g35170hypothetical protein LOC100248155-4e+0At5g20550oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.6787.91611403_atAt5g35170hypothetical protein LOC100241204-2e+0At4g22310unknown proteinO.I.H.G.S.X.
0.5273.91612622_atAt5g35170hypothetical protein LOC100244545-4e+0At5g27170unknown proteinO.I.H.G.S.X.
0.4868.81608934_atAt5g35170hypothetical protein LOC100265538-3e-24At2g28390SAND family proteinO.I.H.G.S.X.
0.4361.51621306_atAt5g35170hypothetical protein LOC100266317-2e-25At2g22120protein binding / zinc ion bindingO.I.H.G.S.X.
0.3548.51619759_atAt5g35170hypothetical protein LOC100253701-5e-29At2g41530SFGH (S-FORMYLGLUTATHIONE HYDROLASE)O.I.H.G.S.X.
0.3039.41606528_atAt5g35170hypothetical protein LOC100241598-2e-8At1g07480transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)O.I.H.G.S.X.
0.2632.01607761_atAt5g35170hypothetical protein LOC100247652-9e-5At1g56460PAPA-1-like family protein / zinc finger (HIT type) family proteinO.I.H.G.S.X.
0.2124.01609881_atAt5g3517026S proteasome regulatory subunit-3e-169At1g53750RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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