Co-expression analysis

Gene ID Contig9902_at
Gene name
Homology with ArabidopsisSimilar to At5g35170: adenylate kinase family protein (HF=2e+0)
Module size 7 genes
NF 0.62
%ile 83.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5774.90.96Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinO.I.H.G.S.X.
0.7187.10.95Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.6784.70.96Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.
0.5774.90.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.5572.00.97Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.4863.20.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.
0.4458.90.96Contig6826_s_atContig6826--8e-1At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.698.6GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
7.498.5GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.198.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.797.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
5.497.5GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.097.2GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
4.997.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.796.9GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.496.6GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0109300, orthologous to the query gene, Contig9902_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7391.1Os08g0109300At5g35170-Adenylate kinase, chloroplast (EC 2.7.4.3)(ATP-AMP transphosphorylase)8e-10At5g47840AMK2 (Adenosine monophosphate kinase)O.I.H.G.S.X.
0.7692.2Os08g0432500At5g35170-ATP-dependent Clp protease adaptor protein ClpSfamily protein3e-2At3g61678unknown proteinO.I.H.G.S.X.
0.7692.2Os04g0657500At5g35170-Lipase, class 3 family protein1e+0At3g17100transcription factorO.I.H.G.S.X.
0.7591.9Os03g0838900At5g35170-Conserved hypothetical protein9e-3At4g09620-O.I.H.G.S.X.
0.7491.4Os03g0744700At5g35170-Conserved hypothetical protein4e-2At1g62250unknown proteinO.I.H.G.S.X.
0.7491.4Os11g0603200At5g35170-ABCF-type protein1e-19At5g64840ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)O.I.H.G.S.X.
0.6987.9Os04g0657300At5g35170-Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)2e-1At1g68552CPuORF53 (Conserved peptide upstream open reading frame 53)O.I.H.G.S.X.
0.6887.5Os07g0656700At5g35170-Protein of unknown function DUF1334 family protein4e-11At5g13720-O.I.H.G.S.X.
0.6382.7Os05g0170900At5g35170-Phosphate/phosphoenolpyruvate translocator1e-1At2g30766unknown proteinO.I.H.G.S.X.
0.6181.2Os03g0128800At5g35170-Conserved hypothetical protein7e-1At1g23530unknown proteinO.I.H.G.S.X.
0.6079.7Os10g0419500At5g35170-Acireductone dioxygenase, ARD family protein2e-10At5g43850ARD4O.I.H.G.S.X.
0.5978.0Os05g0582300At5g35170-Solanesyl diphosphate synthase2e-17At1g17050SPS2 (Solanesyl diphosphate synthase 2)O.I.H.G.S.X.
0.5877.0Os11g0432400At5g35170-2-oxoglutarate/malate translocator2e-13At5g19760dicarboxylate/tricarboxylate carrier (DTC)O.I.H.G.S.X.
0.5777.0Os01g0666600At5g35170-Conserved hypothetical protein5e+0At3g58380meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.5676.3Os09g0250700At5g35170-ABC-1 domain containing protein4e-19At3g07700ABC1 family proteinO.I.H.G.S.X.
0.5573.7Os08g0566600At5g35170-Conserved hypothetical protein3e-2At2g05620PGR5 (proton gradient regulation 5)O.I.H.G.S.X.
0.5471.9Os12g0626400At5g35170-Squalene/phytoene synthase family protein7e-10At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.S.X.
0.4964.4Os02g0593500At5g35170--6e-18At3g26570PHT2O.I.H.G.S.X.
0.4558.8Os04g0644600At5g35170-Epoxide hydrolase family protein4e-21At1g52510hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.4458.1Os02g0285800At5g35170-GTP-binding protein TypA family protein4e-62At5g13650elongation factor family proteinO.I.H.G.S.X.
0.4355.4Os03g0704100At5g35170-PAP fibrillin family protein2e+0At1g35410-O.I.H.G.S.X.
0.4051.1Os07g0626400At5g35170-Heat shock protein DnaJ, N-terminal domaincontaining protein3e-21At1g77930DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.4051.1Os11g0242400At5g35170-Rieske [2Fe-2S] region domain containing protein1e-1At1g71500Rieske (2Fe-2S) domain-containing proteinO.I.H.G.S.X.
0.3541.7Os04g0448600At5g35170-ChaC-like protein family protein2e-3At1g44790ChaC-like family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage