Co-expression analysis

Gene ID	Contig9902_at
Gene name
Homology with Arabidopsis	Similar to At5g35170: adenylate kinase family protein (HF=2e+0)
Module size	7 genes
NF	0.62
%ile	83.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.96	Contig9902_at	Contig9902	-	-	2e+0	At5g35170	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.95	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.4	98.5	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.1	98.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.0	97.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.9	97.1	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.4	96.6	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.71174.1.S1_at, orthologous to the query gene, Contig9902_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	GmaAffx.71174.1.S1_at	At5g35170	-	-	3e-21	At5g47840	AMK2 (Adenosine monophosphate kinase)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.11144.2.S1_at	At5g35170	-	-	7e-61	At1g75630	AVA-P4	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.11144.1.S1_at	At5g35170	-	-	3e-107	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.11144.2.S1_a_at	At5g35170	-	-	7e-61	At1g75630	AVA-P4	O.I.	H.G.	S.X.	Please select
0.23	29.9	Gma.7595.1.S1_at	At5g35170	-	-	3e-5	At5g47870	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	9.0	GmaAffx.1504.1.S1_at	At5g35170	-	-	2e-28	At2g02500	ISPD	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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