Co-expression analysis

Gene ID Contig9890_at
Gene name
Homology with ArabidopsisSimilar to At4g34920: 1-phosphatidylinositol phosphodiesterase-related (HF=8e-1)
Module size 8 genes
NF 0.66
%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.88Contig9890_atContig9890--8e-1At4g349201-phosphatidylinositol phosphodiesterase-relatedO.I.H.G.S.X.
0.7589.50.91Contig18591_atContig18591--6e-1At5g42090-O.I.H.G.S.X.
0.6178.70.93Contig15054_atContig15054--7e-1At2g13570NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)O.I.H.G.S.X.
0.6178.70.88Contig21278_atContig21278--1e-4At1g47580lipoyltransferase, putativeO.I.H.G.S.X.
0.6077.30.89Contig4953_atContig4953--1e-1At5g50200WR3 (WOUND-RESPONSIVE 3)O.I.H.G.S.X.
0.5874.90.89HR01N15u_atHR01N15u--2e+0At2g31420DNA bindingO.I.H.G.S.X.
0.5874.90.89Contig2014_atContig2014--1e-5At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)O.I.H.G.S.X.
0.5774.90.88Contig9888_atContig9888--7e-1At3g47140F-box family protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.099.3GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
10.199.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.897.8GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.697.7GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.697.7GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.396.4GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.296.3GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.296.3GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
4.096.0GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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