Co-expression analysis

Gene ID Contig982_at
Gene name
Homology with ArabidopsisSimilar to At5g20520: WAV2 (WAVY GROWTH 2) (HF=2e-1)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.8092.50.93HVSMEg0015A14r2_atHVSMEg0015A14r2--1e+0At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.6077.30.92Contig21303_atContig21303--2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.4053.10.93HP01O07w_atHP01O07w--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.3342.60.93Contig2636_s_atContig2636--7e-7At1g120101-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeO.I.H.G.S.X.
0.3240.30.93HVSMEb0005F19r2_atHVSMEb0005F19r2--3e-1At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.298.0GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
5.197.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.396.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.396.4GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.995.8GSM6890627 h salt stressed replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.995.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.12534.1.A1_at, orthologous to the query gene, Contig982_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4861.3Zm.12534.1.A1_atAt5g20520hypothetical protein LOC100192944-5e-5At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.4658.4Zm.5851.6.S1_x_atAt5g20520MADS box protein-2e-8At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.2928.1Zm.7755.1.A1_atAt5g20520hypothetical protein LOC100275494-3e-18At1g16460ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)O.I.H.G.S.X.
0.2014.2Zm.18394.1.A1_atAt5g20520ATP-dependent Clp protease ATP-binding subunit clpX-1e-27At5g53350CLPXO.I.H.G.S.X.
0.072.9Zm.4664.3.S1_x_atAt5g20520--4e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.
0.062.3Zm.13132.1.S1_atAt5g20520hypothetical protein LOC100274327-2e-7At1g55900TIM50O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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