Co-expression analysis

Gene ID Contig982_at
Gene name
Homology with ArabidopsisSimilar to At5g20520: WAV2 (WAVY GROWTH 2) (HF=2e-1)
Module size 6 genes
NF 0.55
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig982_atContig982--2e-1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.8092.50.93HVSMEg0015A14r2_atHVSMEg0015A14r2--1e+0At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.6077.30.92Contig21303_atContig21303--2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.4053.10.93HP01O07w_atHP01O07w--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.3342.60.93Contig2636_s_atContig2636--7e-7At1g120101-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeO.I.H.G.S.X.
0.3240.30.93HVSMEb0005F19r2_atHVSMEb0005F19r2--3e-1At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.298.0GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
5.197.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.097.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.396.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.396.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.396.4GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
3.995.8GSM6890627 h salt stressed replicate 3GSE3097Barley1 salinity stress studyLink to GEO
3.995.8GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0608300, orthologous to the query gene, Contig982_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7692.2Os07g0608300At5g20520-Esterase/lipase/thioesterase domain containingprotein1e-2At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.
0.4863.7Os01g0600200At5g20520-Ser/Thr specific protein phosphatase 2A Bregulatory subunit beta isoform4e-37At1g17720ATB BETAO.I.H.G.S.X.
0.4660.9Os03g0130500At5g20520-Calcium-binding EF-hand domain containing protein1e-10At1g20760calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4458.1Os08g0156700At5g20520-VAP272e+0At4g00170vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.3846.9Os03g0825700At5g20520-Defective in exine formation6e-40At3g09090DEX1 (DEFECTIVE IN EXINE FORMATION 1)O.I.H.G.S.X.
0.3745.0Os04g0502200At5g20520-Conserved hypothetical protein1e-7At5g11040-O.I.H.G.S.X.
0.3541.7Os06g0167100At5g20520-Gamma-adaptin, C-terminal domain containingprotein2e-33At1g60070binding / clathrin binding / protein binding / protein transporterO.I.H.G.S.X.
0.3134.5Os01g0511300At5g20520-Proteasome component region PCI domain containingprotein2e-13At4g1900626S proteasome regulatory subunit, putative (RPN9)O.I.H.G.S.X.
0.2931.1Os07g0620300At5g20520-Clathrin adaptor complex, medium chain familyprotein8e-23At4g24550clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.
0.2931.1Os05g0587100At5g20520-Protein phosphatase 2C family protein3e-16At5g53140protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2831.1Os03g0112400At5g20520-AP2 adaptor, appendage domain containing protein5e-2At5g22770alpha-ADR (alpha-adaptin)O.I.H.G.S.X.
0.2831.1Os06g0198800At5g20520-Synaptobrevin family protein3e-13At1g11890SEC22O.I.H.G.S.X.
0.2831.1Os04g0684200At5g20520-Protein kinase domain containing protein6e-18At1g63500ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2727.5Os01g0708100At5g20520-N-myristoyltransferase 1(N-myristoyltransferase-like protein)7e-14At5g57020NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE)O.I.H.G.S.X.
0.2625.6Os08g0550100At5g20520-Proteasome component region PCI domain containingprotein3e-28At1g20200EMB2719 (EMBRYO DEFECTIVE 2719)O.I.H.G.S.X.
0.2422.4Os06g0598900At5g20520-WD40-like domain containing protein3e+0At1g02950ATGSTF4 (GLUTATHIONE S-TRANSFERASE F4)O.I.H.G.S.X.
0.2219.4Os04g0433900At5g20520-Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2)2e+0At4g16880disease resistance protein-relatedO.I.H.G.S.X.
0.2219.4Os06g0218100At5g20520-Hypothetical protein2e-3At1g28200FIP1 (FH INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.2016.5Os03g0810600At5g20520-Ras small GTPase, Ras type family protein3e-23At5g27540MIRO1 (Miro-related GTP-ase 1)O.I.H.G.S.X.
0.149.3Os07g0496000At5g20520-Nt-rab6 protein9e-68At2g44610RAB6AO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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