Co-expression analysis

Gene ID Contig9827_at
Gene name
Homology with ArabidopsisSimilar to At1g22150: SULTR1 (HF=1e-15)
Module size 10 genes
NF 0.23
%ile 28.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8694.80.93Contig9827_atContig9827--1e-15At1g22150SULTR1O.I.H.G.S.X.
0.3342.60.96Contig25607_atContig25607--3e+0At5g24250unknown proteinO.I.H.G.S.X.
0.3037.00.96Contig9510_atContig9510--6e-14At4g39850PXA1 (PEROXISOMAL ABC TRANSPORTER 1)O.I.H.G.S.X.
0.2732.10.96Contig8291_atContig8291--7e-4At5g58020unknown proteinO.I.H.G.S.X.
0.2427.20.95Contig14475_s_atContig14475--3e-2At4g12050DNA-binding protein-relatedO.I.H.G.S.X.
0.1716.90.95Contig3017_atContig3017oxalate oxidase-2e+0At1g18970GLP4 (GERMIN-LIKE PROTEIN 4)O.I.H.G.S.X.
0.1615.30.96Contig11279_atContig11279--1e+0At3g01830calmodulin-related protein, putativeO.I.H.G.S.X.
0.1514.10.95Contig17728_atContig17728--2e+0At3g21510AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)O.I.H.G.S.X.
0.1412.90.95Contig11062_atContig11062--1e+0At2g13660unknown proteinO.I.H.G.S.X.
0.1210.40.95Contig9913_atContig9913--2e-18At2g36130peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.795.5GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.695.3GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.093.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.792.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.692.3GSM440967Stressed palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.591.9GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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