Co-expression analysis

Gene ID Contig9797_at
Gene name
Homology with ArabidopsisSimilar to At1g23010: LPR1 (Low Phosphate Root1) (HF=1e-2)
Module size 7 genes
NF 0.53
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig9797_atContig9797--1e-2At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.6380.30.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5572.00.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.96Contig11383_atContig11383--2e+0At4g36560unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.
0.4053.10.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig24772_atContig24772--1e-4At5g63740zinc finger protein-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.96Contig18587_atContig18587--3e-2At5g10320unknown proteinO.I.H.G.S.X.
0.6784.70.96Contig2110_atContig2110--1e-2At2g39900LIM domain-containing proteinO.I.H.G.S.X.
0.5774.90.93Contig9989_atContig9989--2e-1At4g23710VAG2O.I.H.G.S.X.
0.5066.90.93Contig1169_atContig1169--3e-20At5g22880HTB2O.I.H.G.S.X.
0.5066.90.96Contig13959_atContig13959--1e+0At3g18680aspartate/glutamate/uridylate kinase family proteinO.I.H.G.S.X.
0.4863.20.95Contig12109_atContig12109--2e-16At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.4762.20.95Contig14279_atContig14279--6e+0At1g77290tetrachloro-p-hydroquinone reductive dehalogenase-relatedO.I.H.G.S.X.
0.4762.20.95Contig9517_atContig9517--2e-45At5g40200DegP9 (DegP protease 9)O.I.H.G.S.X.
0.4661.00.95Contig12484_atContig12484--8e-5At5g02580unknown proteinO.I.H.G.S.X.
0.4661.00.95Contig17354_atContig17354--4e+0At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.4458.90.96Contig8059_atContig8059--8e-18At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.4356.40.96Contig8925_atContig8925--3e+0At5g66060iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.4255.20.91Contig15240_atContig15240--2e+0At2g26160-O.I.H.G.S.X.
0.4053.10.93Contig18080_atContig18080--5e+0At5g51730-O.I.H.G.S.X.
0.4053.10.95Contig10724_atContig10724--1e-10At3g48890ATMP2O.I.H.G.S.X.
0.4053.10.96Contig11538_atContig11538--4e-8At4g37120SMP2O.I.H.G.S.X.
0.4053.10.96Contig7149_atContig7149--7e-1At1g04690KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)O.I.H.G.S.X.
0.4053.10.96Contig13036_atContig13036--6e-1At3g57000nucleolar essential protein-relatedO.I.H.G.S.X.
0.3849.50.93Contig16070_atContig16070--9e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.3849.50.93Contig10091_atContig10091--6e-14At5g53540MSP1 protein, putative / intramitochondrial sorting protein, putativeO.I.H.G.S.X.
0.3747.90.94Contig14302_atContig14302--5e+0At5g39530unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig25651_atContig25651--5e-1At2g41225unknown proteinO.I.H.G.S.X.
0.3545.10.95Contig21861_atContig21861--9e-2At1g23530unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig4878_atContig4878--8e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.3545.10.93Contig9737_s_atContig9737--8e-9At3g51250senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.3342.60.95EBem10_SQ002_A13_atEBem10_SQ002_A13--8e+0At3g25580thioredoxin-relatedO.I.H.G.S.X.
0.3342.60.95Contig15179_atContig15179--2e+0At5g46360KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)O.I.H.G.S.X.
0.3342.60.95Contig24322_atContig24322--5e+0At2g04425LCR82 (Low-molecular-weight cysteine-rich 82)O.I.H.G.S.X.
0.3240.30.94Contig8132_atContig8132--4e-8At5g59780MYB59 (MYB DOMAIN PROTEIN 59)O.I.H.G.S.X.
0.3240.30.96Contig11193_s_atContig11193--2e-2At1g72880acid phosphatase survival protein SurE, putativeO.I.H.G.S.X.
0.3037.00.95Contig15150_atContig15150--2e+0At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.3037.00.93Contig15214_atContig15214--6e+0At4g31441unknown proteinO.I.H.G.S.X.
0.2935.50.95Contig25401_atContig25401--4e-3At1g78710unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig11926_s_atContig11926--2e+0At4g18270ATTRANS11O.I.H.G.S.X.
0.2935.50.94Contig22076_atContig22076--1e+1At5g64810WRKY51O.I.H.G.S.X.
0.2935.50.95Contig3970_atContig3970--2e-3At3g55460SCL30O.I.H.G.S.X.
0.2935.50.96Contig4158_atContig4158--8e-63At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.2935.50.96Contig20237_atContig20237--1e+0At1g61810BGLU45 (BETA-GLUCOSIDASE 45)O.I.H.G.S.X.
0.2732.10.91Contig12780_atContig12780--5e-1At2g16575unknown proteinO.I.H.G.S.X.
0.2732.10.93HD03I16u_s_atHD03I16u--1e-6At1g02840SR1O.I.H.G.S.X.
0.2732.10.95Contig18816_atContig18816--3e+0At1g711806-phosphogluconate dehydrogenase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.2732.10.96Contig20549_atContig20549--2e-27At2g39480PGP6 (P-GLYCOPROTEIN 6)O.I.H.G.S.X.
0.2732.10.94Contig16343_atContig16343--5e+0At1g18486unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig6902_atContig6902--3e-1At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.2732.10.95Contig8292_atContig8292--3e-1At1g49290unknown proteinO.I.H.G.S.X.
0.2732.10.96Contig10092_s_atContig10092--1e+0At2g22345-O.I.H.G.S.X.
0.2732.10.96Contig3848_atContig3848--7e-23At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)O.I.H.G.S.X.
0.2630.40.93Contig6948_atContig6948--2e+0At2g25230MYB100 (myb domain protein 100)O.I.H.G.S.X.
0.2630.40.92Contig2916_atContig2916UDP-D-glucuronate decarboxylase-1e-33At2g47650UXS4 (UDP-XYLOSE SYNTHASE 4)O.I.H.G.S.X.
0.2630.40.92Contig7792_s_atContig7792--3e-2At4g24590unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.298.0GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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