Co-expression analysis

Gene ID Contig9797_at
Gene name
Homology with ArabidopsisSimilar to At1g23010: LPR1 (Low Phosphate Root1) (HF=1e-2)
Module size 7 genes
NF 0.53
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig9797_atContig9797--1e-2At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.6380.30.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5572.00.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.96Contig11383_atContig11383--2e+0At4g36560unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.
0.4053.10.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig24772_atContig24772--1e-4At5g63740zinc finger protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.298.0GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.17696.1.A1_at, orthologous to the query gene, Contig9797_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8896.7Zm.17696.1.A1_atAt1g23010--2e-3At4g31470pathogenesis-related protein, putativeO.I.H.G.S.X.
0.5065.7Zm.5028.1.S1_atAt1g23010splicing factor, arginine/serine-rich 12-1e+0At4g23770unknown proteinO.I.H.G.S.X.
0.4759.9Zm.10832.1.A1_atAt1g23010--5e+0At4g08190Ras-related GTP-binding protein, putativeO.I.H.G.S.X.
0.3844.2ZmAffx.781.1.A1_atAt1g23010--1e+1At4g37450AGP18 (ARABINOGALACTAN PROTEIN 18)O.I.H.G.S.X.
0.3742.3ZmAffx.469.1.S1_atAt1g23010--3e+0At2g45250unknown proteinO.I.H.G.S.X.
0.3641.3ZmAffx.193.1.S1_atAt1g23010Respiratory burst oxidase-like protein C-3e+0At2g05915unknown proteinO.I.H.G.S.X.
0.3233.4Zm.13940.1.S1_atAt1g23010hypothetical protein LOC100193246-1e+0At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.3131.6ZmAffx.525.1.S1_atAt1g23010--8e-1At5g23170protein kinase family proteinO.I.H.G.S.X.
0.3029.8ZmAffx.13.1.S1_s_atAt1g23010cellulose synthase 11-2e-61At4g18780IRX1 (IRREGULAR XYLEM 1)O.I.H.G.S.X.
0.3029.8Zm.2864.1.S1_atAt1g23010nucleotide-binding protein 1-4e-33At5g50960NBP35 (NUCLEOTIDE BINDING PROTEIN 35)O.I.H.G.S.X.
0.2724.6ZmAffx.1178.1.S1_atAt1g23010hypothetical protein LOC100272910-3e+0At2g18400ribosomal protein L6 family proteinO.I.H.G.S.X.
0.2724.6Zm.4848.2.S1_a_atAt1g23010SIR2-like histone deacetylase-2e-1At5g55760SRT1 (sirtuin 1)O.I.H.G.S.X.
0.2521.3Zm.13616.1.S1_atAt1g23010--2e+0At4g25315Expressed proteinO.I.H.G.S.X.
0.2216.9Zm.6275.1.S1_a_atAt1g23010benzoxazin6-7e-1At1g066402-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.1710.6Zm.1094.1.A1_atAt1g23010--2e-5At5g26210AL4 (ALFIN-LIKE 4)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage