Co-expression analysis

Gene ID	Contig9797_at
Gene name
Homology with Arabidopsis	Similar to At1g23010: LPR1 (Low Phosphate Root1) (HF=1e-2)
Module size	7 genes
NF	0.53
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig11383_at	Contig11383	-	-	2e+0	At4g36560	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig24772_at	Contig24772	-	-	1e-4	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.2	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261075	Albina e-16 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261063	Xantha s-46 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208892.1.S1_at, orthologous to the query gene, Contig9797_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	86.0	PtpAffx.208892.1.S1_at	At1g23010	hypothetical protein	-	6e-5	At1g71040	LPR2 (Low Phosphate Root2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.126036.1.S1_at	At1g23010	-	-	8e-1	At3g11020	DREB2B (DRE/CRT-BINDING PROTEIN 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.79084.1.S1_at	At1g23010	hypothetical protein	-	2e-18	At5g03880	electron carrier	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.139489.1.S1_s_at	At1g23010	hypothetical protein	-	1e+0	At1g53620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.10990.1.S1_at	At1g23010	hypothetical protein	-	6e-82	At1g67280	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.221342.1.S1_at	At1g23010	hypothetical protein	-	1e-20	At4g10000	electron carrier/ protein disulfide oxidoreductase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.120315.1.S1_at	At1g23010	hypothetical protein	-	5e-16	At3g30200	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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