Co-expression analysis

Gene ID Contig9797_at
Gene name
Homology with ArabidopsisSimilar to At1g23010: LPR1 (Low Phosphate Root1) (HF=1e-2)
Module size 7 genes
NF 0.53
%ile 74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig9797_atContig9797--1e-2At1g23010LPR1 (Low Phosphate Root1)O.I.H.G.S.X.
0.6380.30.96Contig6491_atContig6491--6e-1At5g02230haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.5572.00.97Contig13168_atContig13168--3e+0At5g50130short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.96Contig11383_atContig11383--2e+0At4g36560unknown proteinO.I.H.G.S.X.
0.4356.40.96Contig11789_atContig11789--2e+0At3g04620nucleic acid bindingO.I.H.G.S.X.
0.4053.10.96Contig13436_atContig13436--3e-1At3g23200unknown proteinO.I.H.G.S.X.
0.3545.10.96Contig24772_atContig24772--1e-4At5g63740zinc finger protein-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.298.0GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261074Albina e-16 Control rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.897.0GSM261075Albina e-16 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.595.1GSM261063Xantha s-46 Control rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.394.6GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208892.1.S1_at, orthologous to the query gene, Contig9797_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6086.0PtpAffx.208892.1.S1_atAt1g23010hypothetical protein-6e-5At1g71040LPR2 (Low Phosphate Root2)O.I.H.G.S.X.
0.5683.9PtpAffx.126036.1.S1_atAt1g23010--8e-1At3g11020DREB2B (DRE/CRT-BINDING PROTEIN 2B)O.I.H.G.S.X.
0.5582.2PtpAffx.79084.1.S1_atAt1g23010hypothetical protein-2e-18At5g03880electron carrierO.I.H.G.S.X.
0.4067.0PtpAffx.139489.1.S1_s_atAt1g23010hypothetical protein-1e+0At1g53620unknown proteinO.I.H.G.S.X.
0.2747.1PtpAffx.10990.1.S1_atAt1g23010hypothetical protein-6e-82At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.2543.6PtpAffx.221342.1.S1_atAt1g23010hypothetical protein-1e-20At4g10000electron carrier/ protein disulfide oxidoreductaseO.I.H.G.S.X.
0.2238.3PtpAffx.120315.1.S1_atAt1g23010hypothetical protein-5e-16At3g30200-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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