Co-expression analysis

Gene ID	Contig9794_at
Gene name
Homology with Arabidopsis	Similar to At5g61030: GR-RBP3 (glycine-rich RNA-binding protein 3) (HF=4e-1)
Module size	6 genes
NF	0.40
%ile	55.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.91	Contig9794_at	Contig9794	-	-	4e-1	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig13233_at	Contig13233	-	-	5e-1	At2g42260	UVI4 (UV-B-INSENSITIVE 4)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9793_at	Contig9793	-	-	8e-26	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig8904_at	Contig8904	-	-	2e-8	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig6837_at	Contig6837	-	-	1e-2	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.93	Contig11301_at	Contig11301	-	-	9e-2	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	99.5	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.2	97.4	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9	97.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.7	96.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.7	96.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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