Co-expression analysis

Gene ID Contig9785_at
Gene name
Homology with ArabidopsisSimilar to At4g25620: hydroxyproline-rich glycoprotein family protein (HF=9e-4)
Module size 8 genes
NF 0.64
%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.97Contig9785_atContig9785--9e-4At4g25620hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.7790.80.96Contig17958_atContig17958--2e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.6178.70.97Contig8882_atContig8882--4e-2At3g59680unknown proteinO.I.H.G.S.X.
0.6178.70.97Contig24555_atContig24555--1e+0At2g45070SEC61 BETAO.I.H.G.S.X.
0.5774.90.96Contig13161_atContig13161--8e-1At5g51760AHG1 (ABA-hypersensitive germination 1)O.I.H.G.S.X.
0.5774.90.97Contig5234_atContig5234--5e-11At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.
0.5369.70.97Contig17213_atContig17213--1e+0At2g44110MLO15 (MILDEW RESISTANCE LOCUS O 15)O.I.H.G.S.X.
0.4661.00.97Contig6465_atContig6465--2e-11At4g36960RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.899.2GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.398.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.198.7GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
6.898.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.497.5GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.997.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
3.995.8GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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