Co-expression analysis

Gene ID	Contig9778_at
Gene name
Homology with Arabidopsis	Similar to At3g02120: hydroxyproline-rich glycoprotein family protein (HF=2e+0)
Module size	6 genes
NF	0.65
%ile	86.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.86	Contig9778_at	Contig9778	-	-	2e+0	At3g02120	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.83	rbah29m06_s_at	rbah29m06	-	-	4e-1	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.88	Contig4774_s_at	Contig4774	-	-	8e+0	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.87	Contig10547_at	Contig10547	-	-	6e-1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.81	Contig21146_at	Contig21146	-	-	2e+0	At5g49210	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.85	Contig867_at	Contig867	-	-	1e-3	At4g34910	DEAD/DEAH box helicase, putative (RH16)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.3	97.4	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2	97.4	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM311260	kara_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
5.0	97.2	GSM311265	kara_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.8	97.0	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM310866	lina_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.5	96.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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