Co-expression analysis

Gene ID	Contig9749_at
Gene name
Homology with Arabidopsis	Similar to At1g52310: protein kinase family protein / C-type lectin domain-containing protein (HF=2e-14)
Module size	14 genes
NF	0.17
%ile	20.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	0.90	Contig9749_at	Contig9749	-	-	2e-14	At1g52310	protein kinase family protein / C-type lectin domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig9165_at	Contig9165	-	-	2e-3	At4g31410	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	Contig24272_at	Contig24272	-	-	3e-3	At5g10400	histone H3	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.93	Contig10020_at	Contig10020	-	-	3e-5	At1g29810	dehydratase family	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	S0000800042H10F1_s_at	S0000800042H10F1	-	-	2e-1	At3g26147	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig4782_at	Contig4782	-	-	4e-1	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig9296_at	Contig9296	-	-	1e-1	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig14462_at	Contig14462	-	-	1e+0	At4g00670	DNA binding	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig7117_at	Contig7117	-	-	8e-4	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.93	Contig7383_at	Contig7383	-	-	5e-8	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig9191_at	Contig9191	-	-	2e+0	At2g18200	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig9717_at	Contig9717	-	-	2e-7	At1g33990	MES14 (METHYL ESTERASE 14)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.95	Contig21004_at	Contig21004	-	-	2e+1	At5g19030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.93	HO02E11S_s_at	HO02E11S	-	-	1e-6	At2g31010	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.1	94.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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