Co-expression analysis

Gene ID	Contig9737_s_at
Gene name
Homology with Arabidopsis	Similar to At3g51250: senescence/dehydration-associated protein-related (HF=8e-9)
Module size	21 genes
NF	0.30
%ile	39.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	0.92	Contig9737_s_at	Contig9737	-	-	8e-9	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	Contig11248_at	Contig11248	-	-	2e+0	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig7588_at	Contig7588	-	-	5e-1	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.94	Contig10300_at	Contig10300	-	-	4e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig24322_at	Contig24322	-	-	5e+0	At2g04425	LCR82 (Low-molecular-weight cysteine-rich 82)	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig15509_at	Contig15509	-	-	2e-3	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig11383_at	Contig11383	-	-	2e+0	At4g36560	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	HM11D03r_s_at	HM11D03r	-	-	8e-4	At2g24300	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig11789_at	Contig11789	-	-	2e+0	At3g04620	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig9797_at	Contig9797	-	-	1e-2	At1g23010	LPR1 (Low Phosphate Root1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig4158_at	Contig4158	-	-	8e-63	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig15654_at	Contig15654	-	-	8e+0	At5g16160	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig9995_at	Contig9995	-	-	7e-4	At2g22300	SR1 (SIGNAL RESPONSIVE 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig9507_at	Contig9507	-	-	6e-1	At2g43950	OEP37	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig18587_at	Contig18587	-	-	3e-2	At5g10320	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig12484_at	Contig12484	-	-	8e-5	At5g02580	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig13468_at	Contig13468	-	-	2e+0	At2g33850	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig5487_s_at	Contig5487	-	-	3e-1	At5g65207	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.3	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.1	94.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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