CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9729_at

Gene name
Homology with Arabidopsis Similar to At3g56580: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)

Module size 6 genes

NF 0.35

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 74.9 0.88 Contig9729_at Contig9729 - - 3e+0 At3g56580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.44 58.9 0.88 Contig3685_at Contig3685 - - 8e+0 At5g18970 AWPM-19-like membrane family protein O.I. H.G. S.X.
0.38 49.5 0.88 HVSMEm0008L21r2_at HVSMEm0008L21r2 - - 5e+0 At3g05020 ACP1 (acyl carrier protein 1) O.I. H.G. S.X.
0.33 42.6 0.88 Contig14020_at Contig14020 - - 4e-7 At3g18170 transferase, transferring glycosyl groups O.I. H.G. S.X.
0.22 24.2 0.90 Contig15918_at Contig15918 - - 2e+0 At5g43285 - O.I. H.G. S.X.
0.18 18.2 0.88 Contig4110_s_at Contig4110 - - 5e-2 At5g41400 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.1 99.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
25.3 99.8 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.3 99.1 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.2 98.0 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.2 96.3 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.0 96.0 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.9 95.8 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.7 95.5 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.6 95.3 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222656.1.S1_at, orthologous to the query gene, Contig9729_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 93.6 PtpAffx.222656.1.S1_at At3g56580 hypothetical protein - 4e-2 At1g33340 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related O.I. H.G. S.X.
0.46 73.7 PtpAffx.206382.1.S1_at At3g56580 hypothetical protein - 1e-23 At2g34300 dehydration-responsive protein-related O.I. H.G. S.X.
0.36 61.6 PtpAffx.28818.1.S1_at At3g56580 - - 4e+0 At4g14305 - O.I. H.G. S.X.
0.27 47.1 PtpAffx.139528.2.A1_at At3g56580 - - 4e-10 At3g08570 protein binding / signal transducer O.I. H.G. S.X.
0.26 45.2 PtpAffx.223995.1.S1_at At3g56580 hypothetical protein - 9e-7 At5g27270 EMB976 (EMBRYO DEFECTIVE 976) O.I. H.G. S.X.
0.23 40.5 PtpAffx.209579.1.S1_at At3g56580 hypothetical protein - 2e-1 At3g52150 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.20 34.6 PtpAffx.221803.1.S1_at At3g56580 hypothetical protein - 1e+1 At5g48480 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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