Co-expression analysis

Gene ID	Contig9729_at
Gene name
Homology with Arabidopsis	Similar to At3g56580: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)
Module size	6 genes
NF	0.35
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.88	Contig9729_at	Contig9729	-	-	3e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.88	Contig3685_at	Contig3685	-	-	8e+0	At5g18970	AWPM-19-like membrane family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.88	HVSMEm0008L21r2_at	HVSMEm0008L21r2	-	-	5e+0	At3g05020	ACP1 (acyl carrier protein 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig14020_at	Contig14020	-	-	4e-7	At3g18170	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.90	Contig15918_at	Contig15918	-	-	2e+0	At5g43285	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.88	Contig4110_s_at	Contig4110	-	-	5e-2	At5g41400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
44.1	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
25.3	99.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.3	99.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, Gma.16991.1.A1_at, orthologous to the query gene, Contig9729_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	46.1	Gma.16991.1.A1_at	At3g56580	-	-	5e-2	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.17738.1.S1_at	At3g56580	-	-	9e-10	At5g10480	PAS2 (PASTICCINO 2)	O.I.	H.G.	S.X.	Please select
0.06	9.0	Gma.1130.1.S1_at	At3g56580	-	-	1e+0	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.	Please select
0.04	7.0	Gma.14672.1.A1_at	At3g56580	-	-	3e-4	At1g04520	PDLP2 (PLASMODESMATA-LOCATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.73956.1.S1_at	At3g56580	-	-	8e-1	At3g23805	RALFL24 (ralf-like 24)	O.I.	H.G.	S.X.	Please select
0.00	1.4	Gma.13546.1.A1_at	At3g56580	-	-	3e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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