Co-expression analysis

Gene ID	Contig9698_at
Gene name
Homology with Arabidopsis	Similar to At4g20390: integral membrane family protein (HF=3e-1)
Module size	36 genes
NF	0.37
%ile	50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	0.92	Contig9698_at	Contig9698	-	-	3e-1	At4g20390	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.94	Contig9915_at	Contig9915	-	-	1e-8	At5g16750	TOZ (TORMOZEMBRYO DEFECTIVE)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	S0001000015G12F1_s_at	S0001000015G12F1	-	-	3e+0	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig17100_at	Contig17100	-	-	2e+0	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.95	Contig25417_at	Contig25417	-	-	1e+0	At2g29340	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.96	Contig6910_at	Contig6910	-	-	9e-4	At5g43590	patatin, putative	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.95	Contig5244_at	Contig5244	-	-	1e-37	At5g53460	GLT1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.93	Contig4656_at	Contig4656	-	-	1e-3	At5g60570	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig8286_at	Contig8286	-	-	3e-2	At3g19010	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig4407_at	Contig4407	-	-	8e-13	At2g46280	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig4880_x_at	Contig4880	-	-	2e-20	At1g61800	GPT2	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig3526_at	Contig3526	-	-	1e-3	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig8442_at	Contig8442	-	-	5e-24	At1g34470	permease-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig3636_at	Contig3636	-	-	9e-9	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5853_at	Contig5853	-	-	3e-1	At1g64140	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig25107_at	Contig25107	-	-	2e+0	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.97	Contig6213_at	Contig6213	-	-	8e-4	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig4143_at	Contig4143	-	-	5e-1	At3g06778	heat shock protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig3483_s_at	Contig3483	-	-	6e+0	At2g06005	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.95	Contig4755_at	Contig4755	-	-	1e+1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig3920_at	Contig3920	-	-	3e-21	At5g01410	RSR4 (REDUCED SUGAR RESPONSE 4)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig4316_at	Contig4316	-	-	8e-17	At5g14520	pescadillo-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig694_at	Contig694	-	-	5e-6	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig13861_at	Contig13861	-	-	5e-1	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig8382_at	Contig8382	-	-	3e-2	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig376_at	Contig376	-	-	5e+0	At1g28135	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig3470_at	Contig3470	-	-	1e-11	At2g37340	RSZ33	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.96	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.9	97.1	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.9	93.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.3	90.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.2	90.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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