Co-expression analysis

Gene ID Contig9665_at
Gene name
Homology with ArabidopsisSimilar to At4g12700: unknown protein (HF=6e+0)
Module size 37 genes
NF 0.51
%ile 70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9095.70.90Contig9665_atContig9665--6e+0At4g12700unknown proteinO.I.H.G.S.X.
0.7086.00.94Contig2946_atContig2946--5e-5At5g03630ATMDAR2O.I.H.G.S.X.
0.6985.50.94Contig5574_atContig5574--2e-11At4g30210ATR2 (ARABIDOPSIS P450 REDUCTASE 2)O.I.H.G.S.X.
0.6885.10.95Contig14143_s_atContig14143--2e-2At3g19900unknown proteinO.I.H.G.S.X.
0.6681.50.94Contig4494_s_atContig4494--5e+0At5g55508unknown proteinO.I.H.G.S.X.
0.6480.90.95HV05M01u_x_atHV05M01u--8e+0At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.6279.10.94Contig14618_atContig14618--1e+0At1g49140NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.6279.10.95Contig3963_s_atContig3963--7e-39At4g19210ATRLI2O.I.H.G.S.X.
0.6178.70.94Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.5774.90.94Contig8511_atContig8511--5e+0At5g44850-O.I.H.G.S.X.
0.5674.30.94HVSMEa0014L12r2_atHVSMEa0014L12r2--1e+1At5g36920unknown proteinO.I.H.G.S.X.
0.5572.00.94Contig8375_atContig8375--1e-37At3g23300dehydration-responsive protein-relatedO.I.H.G.S.X.
0.5470.30.96Contig570_s_atContig570--3e-23At1g09200histone H3O.I.H.G.S.X.
0.5470.30.94Contig8956_atContig8956--7e-3At1g64900CYP89A2 (CYTOCHROME P450 89A2)O.I.H.G.S.X.
0.5369.70.94Contig8436_s_atContig8436--7e-2At5g40950RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)O.I.H.G.S.X.
0.5268.30.94Contig5242_atContig5242--3e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.5167.50.92Contig5496_atContig5496--3e-3At3g44190pyridine nucleotide-disulphide oxidoreductase family proteinO.I.H.G.S.X.
0.5167.50.94HA28J12r_s_atHA28J12r--1e+0At3g23255unknown proteinO.I.H.G.S.X.
0.5066.90.94Contig9955_atContig9955--3e-1At2g23310ATRER1C1O.I.H.G.S.X.
0.4963.70.94Contig9809_atContig9809--3e-1At1g63820-O.I.H.G.S.X.
0.4963.70.93Contig13159_atContig13159--2e-16At3g01780TPLATEO.I.H.G.S.X.
0.4762.20.96Contig6330_atContig6330--1e+0At2g18160ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2)O.I.H.G.S.X.
0.4762.20.95Contig4217_atContig4217--3e-71At5g03290isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.4559.30.94Contig6966_atContig6966--5e-29At1g09330unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig3856_atContig3856--1e-19At1g52600signal peptidase, putativeO.I.H.G.S.X.
0.4458.90.93Contig3663_atContig3663--2e+0At3g04640glycine-rich proteinO.I.H.G.S.X.
0.4356.40.93Contig6150_atContig6150--3e-2At3g56290unknown proteinO.I.H.G.S.X.
0.4356.40.95Contig8440_atContig8440--5e-1At1g09155AtPP2-B15 (Phloem protein 2-B15)O.I.H.G.S.X.
0.4356.40.94Contig4444_atContig4444--3e-3At2g40960nucleic acid bindingO.I.H.G.S.X.
0.4153.90.93Contig9440_s_atContig9440--4e-4At3g18760ribosomal protein S6 family proteinO.I.H.G.S.X.
0.4153.90.92Contig8064_atContig8064--1e-1At4g17670senescence-associated protein-relatedO.I.H.G.S.X.
0.4053.10.94Contig15548_atContig15548--2e-7At2g38000chaperone protein dnaJ-relatedO.I.H.G.S.X.
0.3849.50.94Contig12580_atContig12580--1e+0At5g28640AN3 (ANGUSTIFOLIA 3)O.I.H.G.S.X.
0.3545.10.94Contig14183_s_atContig14183--1e+0At3g05170phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.3240.30.93Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.3240.30.94Contig44_atContig44--3e-23At5g02500HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)O.I.H.G.S.X.
0.2935.50.94Contig12841_atContig12841--3e-5At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM372970genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.993.4GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.692.3GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
2.591.9GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.390.9GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.089.0GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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