Co-expression analysis

Gene ID	Contig9642_at
Gene name
Homology with Arabidopsis	Similar to At4g27960: UBC9 (UBIQUITIN CONJUGATING ENZYME 9) (HF=1e-13)
Module size	6 genes
NF	0.56
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.95	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.4	98.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.5	98.6	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.5	98.6	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.5	98.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.3	98.1	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.3	98.1	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.1	98.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.9	97.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.9	97.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.4306.1.S1_at, orthologous to the query gene, Contig9642_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.51	78.9	Ptp.4306.1.S1_at	At4g27960	hypothetical protein	-	5e-78	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	Ptp.4943.1.S1_at	At4g27960	hypothetical protein	-	2e-99	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.4784.1.A1_s_at	At4g27960	hypothetical protein	-	8e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.21710.1.S1_s_at	At4g27960	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	Ptp.7476.1.A1_s_at	At4g27960	hypothetical protein	-	4e-42	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.1258.4.S1_s_at	At4g27960	actin 1 /// actin 9	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.48314.1.S1_at	At4g27960	-	-	3e+0	At1g05850	POM1 (POM-POM1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.221950.1.S1_at	At4g27960	hypothetical protein	-	2e-17	At4g35870	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.5592.1.S1_at	At4g27960	hypothetical protein	-	5e-82	At5g38480	GRF3 (GENERAL REGULATORY FACTOR 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.6505.1.A1_s_at	At4g27960	hypothetical protein	-	2e-36	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.5370.1.S1_at	At4g27960	hypothetical protein	-	6e-24	At3g48570	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.4277.1.S1_a_at	At4g27960	-	-	1e-131	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	Ptp.2453.1.S1_at	At4g27960	hypothetical protein	-	2e-28	At5g52240	MSBP1 (membrane steroid binding protein 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage