Co-expression analysis

Gene ID Contig9642_at
Gene name
Homology with ArabidopsisSimilar to At4g27960: UBC9 (UBIQUITIN CONJUGATING ENZYME 9) (HF=1e-13)
Module size 6 genes
NF 0.56
%ile 77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.95Contig9642_atContig9642--1e-13At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.7187.10.96Contig9200_atContig9200--6e-1At5g10230ANNAT7 (ANNEXIN ARABIDOPSIS 7)O.I.H.G.S.X.
0.6178.70.96Contig1056_s_atContig1056--5e-140At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.4661.00.96Contig6616_atContig6616--1e-57At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.4661.00.96Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.4458.90.95Contig13988_atContig13988--5e-4At4g24020NLP7 (NIN LIKE PROTEIN 7)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.599.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
8.498.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
7.598.6GSM419980Awn_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
7.598.6GSM440971Control awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
7.598.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.398.1GSM419979Awn_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
6.398.1GSM440970Control awn_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.198.0GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM419978Awn_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.997.9GSM440969Control awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g27960, orthologous to the query gene, Contig9642_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5570.6At4g27960828909UBC9 (UBIQUITIN CONJUGATING ENZYME 9)ubiquitin conjugating enzymeO.I.H.G.S.X.
0.4152.4At1g78040844139pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:in 10 processes;C:endomembrane system;PO.I.H.G.S.X.
0.3948.4At3g48140823969senescence-associated protein, putativeF:molecular_function unknown;P:leaf senescence;C:endomembrane system;PO.I.H.G.S.X.
0.3948.4At3g08580820005AAC1 (ADP/ATP CARRIER 1)mitochondrial ADP/ATP carrierO.I.H.G.S.X.
0.3846.7At3g16640820916TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.O.I.H.G.S.X.
0.3846.7At4g29350829056PFN2 (PROFILIN 2)Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression.O.I.H.G.S.X.
0.3643.6At5g64400836561-F:molecular_function unknown;P:biological_process unknown;C:unknown;MFPOBO.I.H.G.S.X.
0.3541.6At1g04410839527malate dehydrogenase, cytosolic, putativeF:in 6 functions;P:response to cadmium ion, response to salt stress;C:in 7 components;BOMPFAO.I.H.G.S.X.
0.3235.7At1g13440837904GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)F:NAD or NADH binding, glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, binding, catalytic activity, glyceraldehyde-3-phosphate dehydrogenase activity;P:response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis;C:in 8 components;BOPFMAO.I.H.G.S.X.
0.2930.3At1g26630839203FBR12 (FUMONISIN B1-RESISTANT12)Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.O.I.H.G.S.X.
0.2930.3At4g37830829939cytochrome c oxidase-relatedF:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPOO.I.H.G.S.X.
0.2930.3At5g48810834939CB5-D (CYTOCHROME B5 ISOFORM D)Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.O.I.H.G.S.X.
0.2830.3At2g38130818391ATMAK3Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.O.I.H.G.S.X.
0.2726.2At1g49140841337NADH-ubiquinone oxidoreductase-relatedF:unknown;P:photorespiration;C:mitochondrion, mitochondrial membrane, respiratory chain complex I;FPMO.I.H.G.S.X.
0.2624.4At4g22310828326unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.H.G.S.X.
0.2420.7At2g47170819330ARF1A1CGene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.2319.3At4g13940827028MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing.O.I.H.G.S.X.
0.2115.8At5g53560835438CB5-E (CYTOCHROME B5 ISOFORM E)Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.O.I.H.G.S.X.

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