Co-expression analysis

Gene ID	Contig9632_at
Gene name
Homology with Arabidopsis	Similar to At1g78370: ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) (HF=1e-1)
Module size	6 genes
NF	0.59
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the maize gene, Zm.550.1.A1_at, orthologous to the query gene, Contig9632_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	Zm.550.1.A1_at	At1g78370	glutathione S-transferase GST 22	-	2e+0	At1g10360	ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.3358.2.S1_at	At1g78370	-	-	7e+0	At2g44420	protein N-terminal asparagine amidohydrolase family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.8401.1.A1_a_at	At1g78370	hypothetical protein LOC100278973	-	8e-2	At3g07910	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.14349.1.S1_at	At1g78370	hypothetical protein LOC100272339	-	3e+0	At5g16010	3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.14497.8.A1_x_at	At1g78370	60S ribosomal protein L27 /// 60S ribosomal protein L27	-	2e-6	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.14302.2.S1_at	At1g78370	-	-	9e-28	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.788.1.A1_x_at	At1g78370	Hypothetical protein LOC100194151	-	7e-72	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.2711.1.A1_at	At1g78370	hypothetical protein LOC100216734	-	4e+0	At5g28288	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.2710.1.S1_at	At1g78370	gibberellin receptor GID1L2	-	1e+1	At5g06570	hydrolase	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.6235.1.A1_at	At1g78370	hypothetical protein LOC100191165	-	2e-41	At1g79500	2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA)	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.7727.4.S1_s_at	At1g78370	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.9400.1.A1_at	At1g78370	-	-	2e+0	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.6149.1.A1_at	At1g78370	omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2	-	9e-1	At5g43070	WPP1 (WPP domain protein 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.5022.1.S1_at	At1g78370	hypothetical protein LOC100279516	-	1e-17	At1g67800	copine-related	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.5288.1.S1_at	At1g78370	-	-	2e+0	At1g11980	RUB3 (UBIQUITIN-RELATED PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.5165.1.A1_at	At1g78370	gpm6 protein	-	5e+0	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.13250.1.S1_at	At1g78370	Zea mays MADS14	-	3e-2	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.13016.1.A1_at	At1g78370	hypothetical protein LOC100277160	-	2e+0	At1g22160	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	Zm.16909.1.A1_at	At1g78370	60S ribosomal protein L27a-3	-	2e-21	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.17181.1.S1_at	At1g78370	-	-	7e-17	At1g64660	ATMGL (ARABIDOPSIS THALIANA METHIONINE GAMMA-LYASE)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13835.1.S1_at	At1g78370	hypothetical protein LOC100193923	-	2e+0	At1g27640	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	Zm.6822.2.A1_at	At1g78370	-	-	3e-2	At5g42560	abscisic acid-responsive HVA22 family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.16380.1.A1_at	At1g78370	hypothetical protein LOC100278221	-	5e+0	At4g24644	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	Zm.161.2.S1_a_at	At1g78370	protein b-32	-	9e-2	At1g65270	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	Zm.12615.1.S1_at	At1g78370	-	-	1e+0	At2g18980	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.19	12.8	Zm.12817.1.A1_at	At1g78370	-	-	7e+0	At5g16486	-	O.I.	H.G.	S.X.	Please select
0.17	10.6	Zm.13851.1.A1_at	At1g78370	-	-	7e-1	At4g38980	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.7644.2.S1_x_at	At1g78370	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.2161.1.A1_at	At1g78370	hypothetical protein LOC100191874	-	3e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.18485.1.S1_at	At1g78370	DNA binding protein	-	4e-8	At1g71260	ATWHY2 (A. THALIANA WHIRLY 2)	O.I.	H.G.	S.X.	Please select
0.13	6.8	Zm.1162.1.S1_at	At1g78370	-	-	9e-17	At5g04170	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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