CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig9632_at

Gene name
Homology with Arabidopsis Similar to At1g78370: ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) (HF=1e-1)

Module size 6 genes

NF 0.59

%ile 81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.97 Contig9632_at Contig9632 - - 1e-1 At1g78370 ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) O.I. H.G. S.X.
0.63 80.3 0.96 Contig12594_at Contig12594 - - 3e+0 At5g11990 proline-rich family protein O.I. H.G. S.X.
0.60 77.3 0.96 Contig10954_at Contig10954 - - 4e+0 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.57 74.9 0.96 rbags1e22_s_at rbags1e22 - - 3e-1 At3g56360 unknown protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig13332_at Contig13332 - - 2e+0 At1g68280 thioesterase-related O.I. H.G. S.X.
0.32 40.3 0.96 Contig4737_s_at Contig4737 - - 3e-29 At2g35040 AICARFT/IMPCHase bienzyme family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 96.8 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.6 95.3 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM372967 genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1 94.1 GSM261069 Albina f-17 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9 93.4 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8 93.1 GSM261068 Albina f-17 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7 92.7 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
2.7 92.7 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6 92.3 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
2.6 92.3 GSM398263 HS41-1_0d_rep3 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the grape gene, 1617423_at, orthologous to the query gene, Contig9632_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 91.5 1617423_at At1g78370 hypothetical protein LOC100245065 - 5e-8 At1g10360 ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18) O.I. H.G. S.X.
0.69 88.3 1614445_at At1g78370 hypothetical protein LOC100250076 - 3e-36 At1g63970 ISPF O.I. H.G. S.X.
0.56 79.4 1620681_at At1g78370 hypothetical protein LOC100244005 - 1e-9 At5g11330 monooxygenase family protein O.I. H.G. S.X.
0.56 79.4 1615571_at At1g78370 hypothetical protein LOC100250417 - 1e-24 At5g24300 SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1) O.I. H.G. S.X.
0.55 77.3 1619183_at At1g78370 hypothetical protein LOC100251027 - 4e-21 At4g27600 pfkB-type carbohydrate kinase family protein O.I. H.G. S.X.
0.51 73.2 1616676_at At1g78370 hypothetical protein LOC100266683 - 8e+0 At5g43518 - O.I. H.G. S.X.
0.44 64.1 1607986_at At1g78370 hypothetical protein LOC100252345 - 2e-49 At1g19920 APS2 O.I. H.G. S.X.
0.44 64.1 1612335_at At1g78370 hypothetical protein LOC100259681 - 4e-7 At3g60070 - O.I. H.G. S.X.
0.43 61.5 1620973_s_at At1g78370 hypothetical protein LOC100265749 - 4e+0 At3g22415 unknown protein O.I. H.G. S.X.
0.41 58.7 1622679_at At1g78370 hypothetical protein LOC100257992 - 1e-20 At5g06220 - O.I. H.G. S.X.
0.39 54.9 1607048_at At1g78370 hypothetical protein LOC100249101 - 7e-28 At1g10500 ATCPISCA (chloroplast-localized IscA-like protein) O.I. H.G. S.X.
0.32 43.1 1616276_at At1g78370 hypothetical protein LOC100240927 - 0 At5g48300 ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1) O.I. H.G. S.X.
0.32 43.1 1617027_at At1g78370 hypothetical protein LOC100258375 - 1e-1 At3g54900 CXIP1 (CAX INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.31 41.3 1621483_at At1g78370 hypothetical protein LOC100254964 - 2e-6 At1g12810 proline-rich family protein O.I. H.G. S.X.
0.28 37.7 1614320_s_at At1g78370 similar to MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase - 2e-33 At4g37040 MAP1D (METHIONINE AMINOPEPTIDASE 1D) O.I. H.G. S.X.
0.25 30.5 1619317_at At1g78370 hypothetical protein LOC100250509 - 4e-125 At5g42270 VAR1 (VARIEGATED 1) O.I. H.G. S.X.
0.22 25.6 1615149_at At1g78370 hypothetical protein LOC100248175 - 4e+0 At5g64200 ATSC35 O.I. H.G. S.X.
0.21 24.0 1611652_s_at At1g78370 hypothetical protein LOC100264196 - 2e-53 At4g14880 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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