Co-expression analysis

Gene ID	Contig9632_at
Gene name
Homology with Arabidopsis	Similar to At1g78370: ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) (HF=1e-1)
Module size	6 genes
NF	0.59
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.1140.1.A1_at, orthologous to the query gene, Contig9632_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	TaAffx.1140.1.A1_at	At1g78370	-	-	7e+0	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.	Please select
0.51	73.0	TaAffx.109116.1.S1_at	At1g78370	-	-	3e-1	At4g10490	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.123656.1.S1_at	At1g78370	-	-	2e+1	At4g30500	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.78376.1.S1_at	At1g78370	-	-	3e-1	At3g14650	CYP72A11	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.12382.3.S1_at	At1g78370	-	-	1e+0	At3g18540	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.25782.1.S1_at	At1g78370	-	-	3e+0	At5g05598	-	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.12382.2.S1_at	At1g78370	-	-	1e+0	At3g02920	replication protein-related	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.109200.1.S1_at	At1g78370	-	-	2e+0	At4g00390	transcription regulator	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.53429.1.S1_at	At1g78370	-	-	4e-3	At1g61860	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.38003.1.S1_at	At1g78370	-	-	1e+0	At1g26220	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.50332.1.S1_at	At1g78370	-	-	7e-2	At1g67600	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.5766.1.S1_at	At1g78370	-	-	2e-16	At5g26340	MSS1	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.59343.1.S1_at	At1g78370	-	-	4e+0	At2g23840	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.28493.1.S1_at	At1g78370	-	-	2e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.23208.1.S1_at	At1g78370	-	-	2e+0	At2g28315	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.4290.1.A1_at	At1g78370	-	-	3e+0	At2g21045	-	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.4073.3.S1_at	At1g78370	-	-	2e-2	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.28493.1.S1_x_at	At1g78370	-	-	2e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.13841.1.S1_at	At1g78370	-	-	6e-5	At3g14680	CYP72A14	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.110753.1.S1_at	At1g78370	-	-	4e+0	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.28994.1.S1_at	At1g78370	-	-	3e-10	At5g49830	-	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.5322.1.S1_at	At1g78370	-	-	9e-3	At1g80120	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.5401.3.S1_a_at	At1g78370	-	-	3e-1	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.54406.1.S1_at	At1g78370	-	-	1e+0	At4g12890	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.78911.1.S1_at	At1g78370	-	-	4e+0	At5g17130	cysteine-type peptidase	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.662.3.S1_a_at	At1g78370	-	-	2e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.79120.1.S1_at	At1g78370	-	-	4e-1	At1g12170	F-box family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.110363.1.S1_at	At1g78370	-	-	3e-19	At5g26340	MSS1	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.11166.1.A1_at	At1g78370	-	-	1e-7	At4g17550	transporter-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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