Co-expression analysis

Gene ID	Contig9632_at
Gene name
Homology with Arabidopsis	Similar to At1g78370: ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20) (HF=1e-1)
Module size	6 genes
NF	0.59
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.97	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

A co-expression module including the soybean gene, Gma.16720.1.S1_at, orthologous to the query gene, Contig9632_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	90.6	Gma.16720.1.S1_at	At1g78370	glutathione S-transferase GST 13	-	3e-4	At1g74590	GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.92300.1.S1_s_at	At1g78370	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.91300.1.S1_s_at	At1g78370	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.90764.1.S1_s_at	At1g78370	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.4269.3.S1_a_at	At1g78370	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.49	68.3	GmaAffx.88920.1.S1_s_at	At1g78370	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.4269.2.S1_a_at	At1g78370	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.55342.1.S1_at	At1g78370	-	-	5e-3	At1g65560	allyl alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.4206.1.S1_s_at	At1g78370	isoflavone synthase 1	-	2e-1	At4g15360	CYP705A3	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.91826.1.S1_s_at	At1g78370	-	-	4e-53	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.93250.1.S1_at	At1g78370	-	-	5e-49	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.18619.1.S1_at	At1g78370	-	-	4e-61	At1g74030	enolase, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.91723.1.S1_at	At1g78370	-	-	3e-86	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.73273.2.S1_s_at	At1g78370	-	-	2e-2	At4g24380	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.4310.1.S1_at	At1g78370	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.15066.2.S1_at	At1g78370	-	-	1e-38	At1g20270	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	GmaAffx.91491.1.S1_s_at	At1g78370	-	-	7e-20	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.86175.1.S1_at	At1g78370	-	-	1e+0	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.86175.2.S1_at	At1g78370	-	-	2e-2	At1g09490	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.1689.1.S1_s_at	At1g78370	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.8284.1.A1_at	At1g78370	-	-	9e-2	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.59462.1.S1_s_at	At1g78370	-	-	2e-1	At4g12530	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	GmaAffx.90396.1.S1_s_at	At1g78370	-	-	4e-53	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.3139.1.S1_s_at	At1g78370	aspartate aminotransferase glyoxysomal isozyme AAT1 precursor	-	4e-43	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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