Co-expression analysis

Gene ID	Contig9564_at
Gene name
Homology with Arabidopsis	Similar to At5g01350: unknown protein (HF=1e+0)
Module size	14 genes
NF	0.27
%ile	34.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.91	Contig9564_at	Contig9564	-	-	1e+0	At5g01350	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig6533_at	Contig6533	-	-	5e-6	At2g46790	APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig7474_at	Contig7474	-	-	6e+0	At5g40650	SDH2-2	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig18939_at	Contig18939	-	-	3e-2	At4g35700	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig1443_s_at	Contig1443	-	-	2e-6	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig8458_at	Contig8458	-	-	1e-4	At4g25640	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig22348_at	Contig22348	-	-	1e+1	At5g52250	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.90	Contig4674_at	Contig4674	-	-	5e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig6642_at	Contig6642	-	-	3e-77	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig11817_at	Contig11817	-	-	3e-2	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.92	Contig10685_at	Contig10685	-	-	6e-7	At1g09830	phosphoribosylamine--glycine ligase (PUR2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig13785_at	Contig13785	-	-	7e-7	At2g21385	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig19130_at	Contig19130	-	-	6e+0	At5g62210	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.92	rbah48m12_s_at	rbah48m12	-	-	1e-3	At2g39970	peroxisomal membrane protein (PMP36)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.7	97.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.7	96.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.4	96.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0	96.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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