Co-expression analysis

Gene ID	Contig9561_at
Gene name
Homology with Arabidopsis	Similar to At4g15780: ATVAMP724 (HF=1e+1)
Module size	6 genes
NF	0.52
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.90	Contig9561_at	Contig9561	-	-	1e+1	At4g15780	ATVAMP724	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig2339_at	Contig2339	-	-	5e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.88	Contig17982_at	Contig17982	-	-	2e+1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.88	HU14G08u_s_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.87	Contig13057_at	Contig13057	-	-	2e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.88	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.6	99.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.6	99.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.7	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage