Co-expression analysis

Gene ID	Contig9559_at
Gene name
Homology with Arabidopsis	Similar to At3g13320: CAX2 (CATION EXCHANGER 2) (HF=2e-5)
Module size	6 genes
NF	0.71
%ile	92.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig9559_at	Contig9559	-	-	2e-5	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.96	Contig10891_s_at	Contig10891	-	-	7e-1	At3g50695	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig9556_at	Contig9556	-	-	2e-4	At2g06050	OPR3 (OPDA-REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig10690_at	Contig10690	-	-	2e-5	At2g35530	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig16415_at	Contig16415	-	-	4e-12	At1g08630	THA1 (Threonine Aldolase 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig10050_s_at	Contig10050	-	-	5e-2	At2g25052	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.5	95.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.4	94.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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