Co-expression analysis

Gene ID Contig9556_at
Gene name
Homology with ArabidopsisSimilar to At2g06050: OPR3 (OPDA-REDUCTASE 3) (HF=2e-4)
Module size 6 genes
NF 0.71
%ile 92.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig9556_atContig9556--2e-4At2g06050OPR3 (OPDA-REDUCTASE 3)O.I.H.G.S.X.
0.8092.50.96Contig10891_s_atContig10891--7e-1At3g50695unknown proteinO.I.H.G.S.X.
0.6784.70.96Contig9559_atContig9559--2e-5At3g13320CAX2 (CATION EXCHANGER 2)O.I.H.G.S.X.
0.6784.70.97Contig10690_atContig10690--2e-5At2g35530bZIP transcription factor family proteinO.I.H.G.S.X.
0.5774.90.96Contig16415_atContig16415--4e-12At1g08630THA1 (Threonine Aldolase 1)O.I.H.G.S.X.
0.5572.00.96Contig10050_s_atContig10050--5e-2At2g25052unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM282034Malting_steeped_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.595.1GSM238436Embryo 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.494.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.494.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.394.6GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage